CN188670

Overview
NameCN188670
Unique NameCN188670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2680 contig Csv1_Contig2680:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188670 vs. ExPASy Swiss-Prot
Match: PPCE_PIG (Prolyl endopeptidase OS=Sus scrofa GN=PREP PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  367 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL-DRGFIFAIAQIRGG 699
            + ++S  +P  +Y  D+   ++   V +  E  + G D ++Y T + +  + DGT+IP+ IV++K  +KLDGS P  LYGYG + I   P ++ SRL  +   G + A+A IRGG
Sbjct:  396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGG 507          
BLAST of CN188670 vs. ExPASy Swiss-Prot
Match: Y4NA_RHISN (Uncharacterized peptidase y4nA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02410 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  418 DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSL-LDRGFIFAIAQIRGG 699
            D     ++KI +    FD      ++ WA++ DGT++P  +V RK+ VKLDG++P +LY YG ++I   P++++    L L++G  +A+A IRGG
Sbjct:  443 DAATGQVEKITSTPARFDAGGLQAQQFWATSKDGTKVPYFLVARKD-VKLDGTNPTILYAYGGFQIPMQPSYSAVLGKLWLEKGGAYALANIRGG 536          
BLAST of CN188670 vs. ExPASy Swiss-Prot
Match: PPCE_MOUSE (Prolyl endopeptidase OS=Mus musculus GN=Prep PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  367 FHYSSLRTPPSVYDYDMDMG-ISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL-DRGFIFAIAQIRGG 699
            + ++S  +P  +Y  D+    +  +   E  + G D  +Y T + +  + DGT+IP+ IV++K  +KLDGS P  LYGYG + I   P ++ SRL  +   G + A+A IRGG
Sbjct:  396 YQFTSFLSPGVIYHCDLTKEELEPMVFREVTVKGIDAADYQTIQIFYPSKDGTKIPMFIVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGG 507          
BLAST of CN188670 vs. ExPASy Swiss-Prot
Match: PPCE_BOVIN (Prolyl endopeptidase OS=Bos taurus GN=PREP PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  367 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL-DRGFIFAIAQIRGG 699
            + ++S  +P  +Y  D+   ++   V +  E  + G D ++Y T + +  + DGT+IP+ IV++K  +KLDGS P  LYGYG + I   P ++  RL  +   G + A+A IRGG
Sbjct:  396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVCRLIFVRHMGGVLAVANIRGG 507          
The following BLAST results are available for this feature:
BLAST of CN188670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PPCE_PIG2.223e-1135.65Prolyl endopeptidase OS=Sus scrofa GN=PREP PE=1 SV... [more]
Y4NA_RHISN4.952e-1136.84Uncharacterized peptidase y4nA OS=Rhizobium sp. (s... [more]
PPCE_MOUSE4.952e-1135.40Prolyl endopeptidase OS=Mus musculus GN=Prep PE=2 ... [more]
PPCE_BOVIN8.446e-1134.78Prolyl endopeptidase OS=Bos taurus GN=PREP PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188670 ID=CN188670; Name=CN188670; organism=Citrus sinensis; type=EST; length=701bp
AGGTTGACACCTCGTGTAGTAGGAGTTGATACAGCAGCCAGTCATCGTGG
AAACCATTTCTTCATAACAAGGAGAAGTGATGAGTTATTCAATTCAGAAC
TACTAGCATGTCCTGTGGACAACACATCTGAAACTACGGTTCTTATTCCA
CACAGAGAAAGTGTAAAACTTCAGGACATACAACTTTTTATTGATCATCT
TGCTGTGTATGAGCGTGAAGGGGGTCTGCAAAAAATAACTACTTATCGTC
TTCCAGCTGTAGGGGAGCCACTCAAAAGCCTCCAAGGTGGCAAGTCTGTT
GAATTTATAGATCCAGTATACTCAATCGATCCATCAGAATCAGTGTTTTC
ATCCAGGATTTTGCGGTTTCATTATAGCTCATTGAGGACACCTCCTTCCG
TATATGATTATGATATGGACATGGGGATTTCTGTTTTGAAGAAAATTGAA
ACTGTCTTGGGAGGTTTTGATACAAACAATTATTTTACTGAAAGGAAGTG
GGCCAGTGCTTCAGATGGCACACAGATTCCTATATGCATTGTCTATCGGA
AGAATCTTGTGAAGCTTGATGGATCAGATCCATTACTACTTTATGGCTAT
GGTTCGTATGAGATCTGCAATGATCCTGCTTTCAACTCATCTCGGCTTTC
TCTATTAGATCGTGGTTTCATCTTTGCGATAGCTCAGATTCGGGGGGGTG
G
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