CN181670

Overview
NameCN181670
Unique NameCN181670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181670 vs. ExPASy Swiss-Prot
Match: PRDC1_XENLA (Phosphoribosyltransferase domain-containing protein 1 OS=Xenopus laevis GN=prtfdc1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12
Identity = 43/144 (29.86%), Postives = 73/144 (50.69%), Query Frame = -3
Query:  210 GAFLFLADLVRNIH---------LPISVDFIRAESYGSGTLSSGAPVLSLDSKLDVKDKHVILVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYFVVGYGMDFAELYRNLPYVGVL 614
            G + F  DLV +I          + + VDFIR + Y +        ++  +    +  K+V++VEDI++TG T+++L+  L       V V +LL K +    Q         Y GFE P+ FVVGY +D+ E +R+L ++ ++
Sbjct:   76 GGYRFCTDLVEHIKNLSRNSERFISMRVDFIRLKCYRNDQCMDEMQIIGGEDLAKLSGKNVLIVEDIINTGRTMTALLNQLEKYKPKMVKVASLLVKRSASSNQYR-----PDYTGFEIPNKFVVGYALDYNEYFRDLHHICII 214          
BLAST of CN181670 vs. ExPASy Swiss-Prot
Match: HGXR_TOXGO (Hypoxanthine-guanine-xanthine phosphoribosyltransferase OS=Toxoplasma gondii GN=HPRT PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.000e-11
Identity = 45/128 (35.16%), Postives = 68/128 (53.12%), Query Frame = -3
Query:  186 PISVDFIRAESYGSGTLSSGAPVLSLDSKLDVKDKHVILVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYFVVGYGMDFAELYRNLPYVGVLKPECYK*F 569
            P    ++R +SY +   +    VLS D  +  +DKHV++VEDIVDTG TL+     L + G  S+ + TL++K   R   +    +G F  GF   D ++VG   DF E++R+  +V VL     K F
Sbjct:  107 PFFEHYVRLKSYQNDNSTGQLTVLSDDLSI-FRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSL----KGDFV-GFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKF 228          
The following BLAST results are available for this feature:
BLAST of CN181670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
PRDC1_XENLA8.980e-1229.86Phosphoribosyltransferase domain-containing protei... [more]
HGXR_TOXGO2.000e-1135.16Hypoxanthine-guanine-xanthine phosphoribosyltransf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181670 ID=CN181670; Name=CN181670; organism=Citrus sinensis; type=EST; length=667bp
GAGGGTATATAACACCAATAACAATTTACCAAGCAAATGAAAAAACCATT
CATCTTATCAGGAGAGCCTATTAGAACTGCATTTATCATCAATTACCAAA
TGCCAAGAATCTGTAGAAGTTGCAAAGAGTCTGGATTTGTAGAATAAGTT
TATTGACCGCCCTGTCAAAGAGCCAGTGACGGATAAAATTATTTGTAGCA
TTCAGGCTTCAACACTCCAACATAAGGCAGGTTCCTATATAATTCAGCGA
AGTCCATTCCATAGCCCACAACGAAATAATCTGGACACTCAAATCCCCGA
TAGAACTTTCCTTCACCCACTAGCTCCACCTGAATCTTTCTTCTGGCTGG
TTTATCAAGGAGAGTGCAGACTGAGACAGAAGATGCTCCTTTGGATACCA
AGTTTGCAATAAGAGATGATAATGTGGTTCCTGTATCTACAATGTCCTCG
ACCAAGATTACGTGCTTGTCCTTAACATCGAGTTTCGAATCGAGGGAAAG
AACAGGGGCTCCACTGGAGAGAGTACCGGAGCCGTAGGATTCAGCACGAA
TGAAATCAACGGAGATAGGGAGGTGAATATTTCTGACCAGGTCAGCCAAG
AAGAGAAACGCTCCGGTGGCGACACCCACGACGACAGGCGGCGGGGAAAC
GGAGTTGAAATCGTGGG
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