CN181661

Overview
NameCN181661
Unique NameCN181661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.665e-43
Identity = 86/109 (78.90%), Postives = 91/109 (83.49%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPP+V ID              A+QPLPD+DDD  E
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.665e-43
Identity = 86/109 (78.90%), Postives = 91/109 (83.49%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPP+V ID              A+QPLPD+DDD  E
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.175e-43
Identity = 87/109 (79.82%), Postives = 90/109 (82.57%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE+ AL PPEV ID              A+QPLPD+DDD  E
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDLIE 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.175e-43
Identity = 87/109 (79.82%), Postives = 90/109 (82.57%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE+ AL PPEV ID              A+QPLPD+DDD  E
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDLIE 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.544e-39
Identity = 78/105 (74.29%), Postives = 85/105 (80.95%), Query Frame = -2 
Query:  291 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 605
            RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+PNL FV SPALAPPEVQ+D              A+ PLPDEDD
Sbjct:  109 RVCENIPIVLCGNKVDVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLEFVASPALAPPEVQVDQQLLAQYQQEMNEAAAMPLPDEDD 213
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.613e-38
Identity = 77/105 (73.33%), Postives = 84/105 (80.00%), Query Frame = -2 
Query:  291 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 605
            RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:  113 RVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMHQYQQEMDQATALPLPDEDD 217
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.613e-38
Identity = 77/105 (73.33%), Postives = 84/105 (80.00%), Query Frame = -2 
Query:  291 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 605
            RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:  112 RVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 216
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.613e-38
Identity = 77/105 (73.33%), Postives = 84/105 (80.00%), Query Frame = -2 
Query:  291 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 605
            RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:  107 RVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 211
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.107e-38
Identity = 77/105 (73.33%), Postives = 84/105 (80.00%), Query Frame = -2 
Query:  291 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 605
            RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:  107 RVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLDFVASPALAPPEVQVDEQLMQQYQQEMERATALPLPDEDD 211
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.694e-38
Identity = 76/105 (72.38%), Postives = 83/105 (79.05%), Query Frame = -2 
Query:  291 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 605
            RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:  107 RVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDEDD 211
The following BLAST results are available for this feature:
BLAST of CN181661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN1_ORYSJ1.665e-4378.90GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI1.665e-4378.90GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN2_ORYSJ2.175e-4379.82GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI2.175e-4379.82GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
SPI1_SCHPO5.544e-3974.29GTP-binding nuclear protein spi1 OS=Schizosaccharo... [more]
GSP2_YEAST1.613e-3873.33GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
GSP1_YEAST1.613e-3873.33GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
GSP1_CANGA1.613e-3873.33GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
GSP1_ASHGO2.107e-3873.33GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
GSP1_CANAL4.694e-3872.38GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181661 ID=CN181661; Name=CN181661; organism=Citrus sinensis; type=EST; length=606bp
ATTATCACACAATATATAAATGAACTAGGATATGGGGCATCATTTAAACA
TCCTACAGAAAATTGGATGGCTCCCCCGCTGGTAAACAGAGAATGTAGAC
GCGAAAACAAAAACAAGTAGAGACTGACATGAATTAGGCAAGAGTAAGAA
ACACAATGCTAAATAAGCCAGCAATGGTTCAATCCAAAGCTCATGTCAAA
AGACACCCAACAGATCCTCAAAACAATCAATATTGAACTCTTCACTCCAA
TAATCACACGATCCATTGTCTTCTTTCACTCGAAGGCGTCATCATCTTCA
TCTGGGAGAGGTTGACTAGCAGCAGCAGCAAGTTCAGCTTCATGTTGTTG
CTGAGCAGCCAAATCGATTTGCACCTCTGGGGGAGCAAGGGCAGGAGACT
CGACAAAATGCAAGTTAGGATCCCCAGCAAGTTTTCTGGCAAGGTAAAGA
AAAGGCTTCTCAAAGTTGTAATTGCTCTTGGCTGAGATCTCATAGTACTG
CAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGCTTTCACCTGCCTGT
TCTTCACATCGACCTTGTTCCCGCAAAGAACAATTGGGATGTTTTCACAC
ACCCTG
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