CN181661

Overview
NameCN181661
Unique NameCN181661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.130e-38
Identity = 77/106 (72.64%), Postives = 84/106 (79.25%), Query Frame = -2 
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ+D              A   LPD+DDD
Sbjct:  109 RVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLPDDDDD 214
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.366e-37
Identity = 74/106 (69.81%), Postives = 83/106 (78.30%), Query Frame = -2 
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE PALAPPE+ +D              +   LPDEDDD
Sbjct:  109 RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETALPDEDDD 214
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.189e-37
Identity = 74/106 (69.81%), Postives = 82/106 (77.36%), Query Frame = -2 
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:  110 RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATALPDEDDD 215
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.189e-37
Identity = 74/106 (69.81%), Postives = 82/106 (77.36%), Query Frame = -2 
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:  110 RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.189e-37
Identity = 74/106 (69.81%), Postives = 82/106 (77.36%), Query Frame = -2 
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:  110 RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.189e-37
Identity = 74/106 (69.81%), Postives = 82/106 (77.36%), Query Frame = -2 
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:  110 RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.189e-37
Identity = 74/106 (69.81%), Postives = 82/106 (77.36%), Query Frame = -2 
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:  110 RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.189e-37
Identity = 74/106 (69.81%), Postives = 82/106 (77.36%), Query Frame = -2 
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:  110 RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.189e-37
Identity = 74/106 (69.81%), Postives = 82/106 (77.36%), Query Frame = -2 
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:  110 RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQIAQTTALPDEDDD 215
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.189e-37
Identity = 74/106 (69.81%), Postives = 82/106 (77.36%), Query Frame = -2 
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:  110 RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
The following BLAST results are available for this feature:
BLAST of CN181661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN_CAEEL6.130e-3872.64GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RAN_DANRE1.366e-3769.81GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAN_XENLA5.189e-3769.81GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT5.189e-3769.81GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]
RAN_PONAB5.189e-3769.81GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_MOUSE5.189e-3769.81GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA5.189e-3769.81GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]
RAN_HUMAN5.189e-3769.81GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
RAN_CHICK5.189e-3769.81GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA5.189e-3769.81GTP-binding nuclear protein Ran OS=Canis familiari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181661 ID=CN181661; Name=CN181661; organism=Citrus sinensis; type=EST; length=606bp
ATTATCACACAATATATAAATGAACTAGGATATGGGGCATCATTTAAACA
TCCTACAGAAAATTGGATGGCTCCCCCGCTGGTAAACAGAGAATGTAGAC
GCGAAAACAAAAACAAGTAGAGACTGACATGAATTAGGCAAGAGTAAGAA
ACACAATGCTAAATAAGCCAGCAATGGTTCAATCCAAAGCTCATGTCAAA
AGACACCCAACAGATCCTCAAAACAATCAATATTGAACTCTTCACTCCAA
TAATCACACGATCCATTGTCTTCTTTCACTCGAAGGCGTCATCATCTTCA
TCTGGGAGAGGTTGACTAGCAGCAGCAGCAAGTTCAGCTTCATGTTGTTG
CTGAGCAGCCAAATCGATTTGCACCTCTGGGGGAGCAAGGGCAGGAGACT
CGACAAAATGCAAGTTAGGATCCCCAGCAAGTTTTCTGGCAAGGTAAAGA
AAAGGCTTCTCAAAGTTGTAATTGCTCTTGGCTGAGATCTCATAGTACTG
CAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGCTTTCACCTGCCTGT
TCTTCACATCGACCTTGTTCCCGCAAAGAACAATTGGGATGTTTTCACAC
ACCCTG
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