CN181661

Overview
NameCN181661
Unique NameCN181661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.719e-35
Identity = 71/106 (66.98%), Postives = 80/106 (75.47%), Query Frame = -2
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVD+K+ +VKAK + FHRKKNLQYY+ISAKSNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPDE+DD
Sbjct:  110 RVCENIPIVLCGNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.344e-35
Identity = 71/106 (66.98%), Postives = 80/106 (75.47%), Query Frame = -2
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVDVK+ +VKAK + FHRKKNLQYY+ISA+SNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPDE+DD
Sbjct:  110 RVCENIPIVLCGNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.148e-34
Identity = 71/106 (66.98%), Postives = 80/106 (75.47%), Query Frame = -2
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+  L FV +PALAPP   +D              A  PLP+E+DD
Sbjct:  107 RVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNNALEFVAAPALAPPTAVVDQELMEKYRAEMDEAAQMPLPNEEDD 212          
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.751e-28
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = -2
Query:  282 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI--DXXXXXXXXXXXXXXASQ--PLPDEDDDAF 605
            R+CEN+PIVL GNKVD K+ +VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDPNL+ VE  ALAP ++ +  D               +Q   LPDE+DD F
Sbjct:  111 RICENVPIVLVGNKVDSKDSKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLNLVEGIALAPVDIHMTEDQIKQLQMEHDEAMNLAQQGQLPDEEDDEF 222          
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.304e-27
Identity = 57/106 (53.77%), Postives = 73/106 (68.87%), Query Frame = -2
Query:  288 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 605
            RVCENIPIVLCGNKVDVK+R+VK  Q+ FHR+ NL YY++SAKSNYNFEKPF++L  KL G+  +  V+ P L  PE  +D              A+ PLP+++DD
Sbjct:  106 RVCENIPIVLCGNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETVLDSNLMSLYEKEVADAAALPLPEDNDD 211          
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.416e-26
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = -2
Query:  282 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ----IDXXXXXXXXXXXXXXASQP--LPDEDDDAF 605
            R+CENIPIVL GNKVD K+R+VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDP L+ VE  AL  P+ +     D               +Q   LPD++DD F
Sbjct:  111 RICENIPIVLVGNKVDSKDRKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLNLVEGIALVAPDTEHVMTEDQIKQLEMEQAEAMNLAQQGVLPDDEDDEF 224          
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.416e-26
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = -2
Query:  306 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPL 605
            RVC+NIPIVLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD  L FVES     PE QID               +QPL
Sbjct:  113 RVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVES-----PEAQIDNLDVESLQLLTVEAGTQPL 207          
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.156e-26
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = -2
Query:  363 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 605
            RVCE IP+VL GNKVDVK+RQVK++Q+ FHRK+NLQYY++SA+SNYNFEKPFL+LAR+L+  PNL FV   A A PE QID
Sbjct:  109 RVCETIPMVLVGNKVDVKDRQVKSRQIQFHRKRNLQYYDLSARSNYNFEKPFLWLARRLSNQPNLVFVGEHAKA-PEFQID 188          
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = -2
Query:  303 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLP 605
            RVC NIPIV+CGNKVD+ +++   K V F RK N+   E+SAKSNYN EKPF+YL RKL GDP+L  V+SPA+ PP+V                  S+PLP
Sbjct:  110 RVCGNIPIVICGNKVDIMHKKTWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSLQLVQSPAIQPPKVVFTDEMSRQVESLFNEAKSKPLP 210          
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.395e-18
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = -2
Query:  294 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDED 590
            + IVL GNK DVK+R+++ + V FHR KN+ Y EISAK N+N+E P L + R L  DP + F ++PAL P ++ +D               + PLPD+D
Sbjct:  128 LAIVLVGNKCDVKDREIRTQTVKFHRSKNIPYVEISAKDNFNYELPILSILRTLLNDPTIQFSQAPALLPADIGMDAATREQINKDLEAVNNVPLPDDD 226          
The following BLAST results are available for this feature:
BLAST of CN181661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RANT_RAT3.719e-3566.98GTP-binding nuclear protein Ran, testis-specific i... [more]
RANT_MOUSE6.344e-3566.98GTP-binding nuclear protein Ran, testis-specific i... [more]
GSP1_NEUCR3.148e-3466.98GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
RAN_TETPY5.751e-2854.46GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAN_DICDI8.304e-2753.77GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RAN_TETTH1.416e-2652.63GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAN4_ARATH1.416e-2661.00GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RAN_PLAFA3.156e-2670.37GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RANL_DROME9.501e-2351.49GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN_GIALA5.395e-1842.42GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001E19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181661 ID=CN181661; Name=CN181661; organism=Citrus sinensis; type=EST; length=606bp
ATTATCACACAATATATAAATGAACTAGGATATGGGGCATCATTTAAACA
TCCTACAGAAAATTGGATGGCTCCCCCGCTGGTAAACAGAGAATGTAGAC
GCGAAAACAAAAACAAGTAGAGACTGACATGAATTAGGCAAGAGTAAGAA
ACACAATGCTAAATAAGCCAGCAATGGTTCAATCCAAAGCTCATGTCAAA
AGACACCCAACAGATCCTCAAAACAATCAATATTGAACTCTTCACTCCAA
TAATCACACGATCCATTGTCTTCTTTCACTCGAAGGCGTCATCATCTTCA
TCTGGGAGAGGTTGACTAGCAGCAGCAGCAAGTTCAGCTTCATGTTGTTG
CTGAGCAGCCAAATCGATTTGCACCTCTGGGGGAGCAAGGGCAGGAGACT
CGACAAAATGCAAGTTAGGATCCCCAGCAAGTTTTCTGGCAAGGTAAAGA
AAAGGCTTCTCAAAGTTGTAATTGCTCTTGGCTGAGATCTCATAGTACTG
CAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGCTTTCACCTGCCTGT
TCTTCACATCGACCTTGTTCCCGCAAAGAACAATTGGGATGTTTTCACAC
ACCCTG
back to top