CN181661

Overview
NameCN181661
Unique NameCN181661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = -2 
Query:  363 PIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 587
            PIV+C NK+D+KNRQ  +K++     + KN +Y+EISAK+ +NF  PFL+LAR   G P+L FV +  L P EV  D
Sbjct:  115 PIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYD 191
The following BLAST results are available for this feature:
BLAST of CN181661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GSP1_ENCCU2.346e-1349.35GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181661 ID=CN181661; Name=CN181661; organism=Citrus sinensis; type=EST; length=606bp
ATTATCACACAATATATAAATGAACTAGGATATGGGGCATCATTTAAACA
TCCTACAGAAAATTGGATGGCTCCCCCGCTGGTAAACAGAGAATGTAGAC
GCGAAAACAAAAACAAGTAGAGACTGACATGAATTAGGCAAGAGTAAGAA
ACACAATGCTAAATAAGCCAGCAATGGTTCAATCCAAAGCTCATGTCAAA
AGACACCCAACAGATCCTCAAAACAATCAATATTGAACTCTTCACTCCAA
TAATCACACGATCCATTGTCTTCTTTCACTCGAAGGCGTCATCATCTTCA
TCTGGGAGAGGTTGACTAGCAGCAGCAGCAAGTTCAGCTTCATGTTGTTG
CTGAGCAGCCAAATCGATTTGCACCTCTGGGGGAGCAAGGGCAGGAGACT
CGACAAAATGCAAGTTAGGATCCCCAGCAAGTTTTCTGGCAAGGTAAAGA
AAAGGCTTCTCAAAGTTGTAATTGCTCTTGGCTGAGATCTCATAGTACTG
CAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGCTTTCACCTGCCTGT
TCTTCACATCGACCTTGTTCCCGCAAAGAACAATTGGGATGTTTTCACAC
ACCCTG
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