CN188661

Overview
NameCN188661
Unique NameCN188661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.079e-26
Identity = 62/161 (38.51%), Postives = 96/161 (59.63%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIMRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLV 162          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.549e-25
Identity = 62/161 (38.51%), Postives = 96/161 (59.63%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLV 162          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.642e-25
Identity = 63/161 (39.13%), Postives = 95/161 (59.01%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  LR IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLV 162          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.450e-25
Identity = 59/161 (36.65%), Postives = 95/161 (59.01%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586
            +R F+ +G+    ++E L +EL   GY G++++ TP+ T+++I   R   V+G  GR+IRELT ++++RF      +E+  E++ N    A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNPAETLV 162          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.450e-25
Identity = 62/161 (38.51%), Postives = 95/161 (59.01%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++ I A     V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLV 162          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.982e-24
Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLV 162          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.498e-24
Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLV 162          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.110e-23
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            +RKFV DG   A ++E    +L   GY G+E+  TP+ T+I+I + +   V+G+ G+ IR+LT  V  R+      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV+E +D
Sbjct:    4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVAARYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVD 163          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.473e-23
Identity = 59/162 (36.42%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            ++KFV DG   A ++E    +L+  GY G+E+  TP+ T+I+I + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVD 163          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.396e-23
Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            ++KFV DG   A ++E    +L   GY G+E+  TP+ T+III + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIRKLTRDVATKYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVD 163          
The following BLAST results are available for this feature:
BLAST of CN188661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_THEON9.079e-2638.5130S ribosomal protein S3P OS=Thermococcus onnurine... [more]
RS3_THEGJ1.549e-2538.5130S ribosomal protein S3P OS=Thermococcus gammatol... [more]
RS3_PYRFU2.642e-2539.1330S ribosomal protein S3P OS=Pyrococcus furiosus G... [more]
RS3_THESM3.450e-2536.6530S ribosomal protein S3P OS=Thermococcus sibiricu... [more]
RS3_PYRKO3.450e-2538.5130S ribosomal protein S3P OS=Pyrococcus kodakaraen... [more]
RS3_PYRAB4.982e-2436.0230S ribosomal protein S3P OS=Pyrococcus abyssi GN=... [more]
RS3_PYRHO8.498e-2436.0230S ribosomal protein S3P OS=Pyrococcus horikoshii... [more]
RS3_METBF1.110e-2337.6530S ribosomal protein S3P OS=Methanosarcina barker... [more]
RS3_METAC2.473e-2336.4230S ribosomal protein S3P OS=Methanosarcina acetiv... [more]
RS3_METMA9.396e-2336.4230S ribosomal protein S3P OS=Methanosarcina mazei ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188661 ID=CN188661; Name=CN188661; organism=Citrus sinensis; type=EST; length=603bp
TCGCAAACACCTATTAAGGCGGACTAGAGAGTGAGAGACTCCCAAAGCGC
CCTAACAGCAGCGGTGTTGGATTCTGAGAAACATGGCTACTCAGATTAGC
AAGAAGCGGAAATTTGTTGCCGACGGTGTCTTCTTTGCGGAGCTTAATGA
AGTTCTGACCCGAGAGCTTGCGGAAGATGGATACTCTGGTGTCGAAGTTA
GGGTTACACCTGTGCGCACTGAGATCATCATTAGGGCCACTCGCACTCAG
AATGTTCTCGGTGAGAAGGGAAGAAGGATTAGGGAGCTTACTTCTGTTGT
TCAGAAACGATTCAAGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGA
AAGTTAACAATAGGGGTCTCTGTGCCGTTGCTCAGGCTGAGTCTCTGCGT
TACAAGCTTCTTGGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCT
GAGATTTATCATGGAGAGTGGTGCCCAGGGATGTGAGGTTATTGTGAGTG
GAAAGCTCCGGGCTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTAC
ATGATATCCTCAGGTCAACCTGTGAATGAATACATCGACTCCGCTGTAAG
ACA
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