CN188661
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 9.079e-26 Identity = 62/161 (38.51%), Postives = 96/161 (59.63%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586 +R F+ +GV ++E L +EL GY G++++ TP+ T++II A V+G GRRIRELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + Sbjct: 4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIMRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLV 162
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.549e-25 Identity = 62/161 (38.51%), Postives = 96/161 (59.63%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586 +R F+ +GV ++E L +EL GY G++++ TP+ T++II A V+G GRRIRELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + Sbjct: 4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLV 162
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.642e-25 Identity = 63/161 (39.13%), Postives = 95/161 (59.01%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586 +R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIRELT +++K+F +E+ E++ N L A QA L L G+ RRA Y LR IM +GA+G E+ +SGKL +RAKS++F GY+ G P + Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLV 162
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.450e-25 Identity = 59/161 (36.65%), Postives = 95/161 (59.01%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586 +R F+ +G+ ++E L +EL GY G++++ TP+ T+++I R V+G GR+IRELT ++++RF +E+ E++ N A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + Sbjct: 4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNPAETLV 162
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.450e-25 Identity = 62/161 (38.51%), Postives = 95/161 (59.01%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586 +R F+ +GV ++E L +EL GY G++++ TP+ T++ I A V+G GRRIRELT +++K+F +E+ E++ N L A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + Sbjct: 4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLV 162
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.982e-24 Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586 +R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIRELT +++++F +++ +++ N L A QA + L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLV 162
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.498e-24 Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586 +R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIRELT +++++F +++ +++ N L A QA + L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLV 162
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.110e-23 Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589 +RKFV DG A ++E +L GY G+E+ TP+ T+I+I + + V+G+ G+ IR+LT V R+ ++ A++V L A A L + G R+A + LR +M +GA GCEV++SGKL R++ KF DGY+ SG PV+E +D Sbjct: 4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVAARYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVD 163
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.473e-23 Identity = 59/162 (36.42%), Postives = 93/162 (57.41%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589 ++KFV DG A ++E +L+ GY G+E+ TP+ T+I+I + + V+G+ G+ IR+LT V ++ ++ A++V L A A L + G R+A + LR +M +GA GCEV++SGKL R++ KF DGY+ SG PV E +D Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVD 163
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.396e-23 Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589 ++KFV DG A ++E +L GY G+E+ TP+ T+III + + V+G+ G+ IR+LT V ++ ++ A++V L A A L + G R+A + +R +M +GA GCEV++SGKL R++ KF DGY+ SG PV E +D Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIRKLTRDVATKYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVD 163 The following BLAST results are available for this feature:
BLAST of CN188661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188661 ID=CN188661; Name=CN188661; organism=Citrus sinensis; type=EST; length=603bpback to top |