CN188661

Overview
NameCN188661
Unique NameCN188661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METLZ (30S ribosomal protein S3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps3p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.396e-23
Identity = 61/162 (37.65%), Postives = 95/162 (58.64%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            ++KFVADGV    + + L +EL   GY G+++  TPV T++ I A +   V+G+ G+ +R+LT+ +   +      VE+  ++V N  L A   AE L   L  G   R+A   V+R +M+SGA GCEVI++GKL   RA+  KF +GY+  SG+P    ++
Sbjct:    4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVRQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVMDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVE 163          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.227e-22
Identity = 61/162 (37.65%), Postives = 94/162 (58.02%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            +R FV + V    ++E   +EL++ GYS  ++R TP+ T+III A +   V+G +G RIRELT  + K F   +  +++  + V N  L A   A+ +   L  GL  RR  +  +R +M +GA+G  VI+SGKL  +RA++ KF  GYM   G+P  E +D
Sbjct:    3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVD 162          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METHJ (30S ribosomal protein S3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.603e-22
Identity = 63/162 (38.89%), Postives = 91/162 (56.17%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            +RKFVADGV    +   L  EL   GY G+++  TP+ T++ I A +   V+G+ G+ +R LT  +   +      +E+  ++V+N  L A   AE L   L  G   R+A    LR IM+SGA GCEV++SGKL   R +  KF +GY+  SG PVN  +D
Sbjct:    4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVRTLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIMDSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVD 163          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METMJ (30S ribosomal protein S3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.734e-22
Identity = 58/162 (35.80%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            ++KF+ DGV    + + LT+EL   GY G+++  TP+ T++ I A +   V+G+ G+++R+LT  +   +      VE+  ++V N    A   AE L   L  G   R+A    +R IMESGA GCEVIV+GKL   R+++ KF +GY+   G+P    ++
Sbjct:    4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVE 163          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_HALMA (30S ribosomal protein S3P OS=Haloarcula marismortui GN=rps3p PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.570e-22
Identity = 55/168 (32.74%), Postives = 101/168 (60.12%), Query Frame = 2
Query:   95 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 598
            ++ +++F+ DG+   +++E    EL   GY G++V  TP+ T+I+++A +   V+G+ G+ IR++T+ ++ RF   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R++  KF  GY+  +G+P  E +DS V
Sbjct:    1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGV 166          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.090e-22
Identity = 54/162 (33.33%), Postives = 95/162 (58.64%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            +RKF+A+G   A + + LT+EL   G+ G+++  TP+ T++ I A +   V+G+ G+ + +LT  + + +      +E+  ++V N    A   AE L   L  G   R+A   ++R +M+SGA GCEV+++GKL   RA++ KF +GY+   G+P N  ++
Sbjct:    4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVE 163          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_NATPD (30S ribosomal protein S3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.954e-22
Identity = 55/168 (32.74%), Postives = 101/168 (60.12%), Query Frame = 2
Query:   95 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 598
            ++ + +F+ DG+   +++E  + EL+  GY G+EV  TP+ T+I+++A +   V+G+ G+ IR++T+ +++ F   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+I+SGK+   R++  KF  GY+  +G+P    +DS V
Sbjct:    1 MADEHQFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGV 166          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METTP (30S ribosomal protein S3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.954e-22
Identity = 58/163 (35.58%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDS 592
            ++KFV +G   A ++E L +EL   GY G+ +  TP+ T+I + A +   V+G+ G+ IR+LT  +++RF+     +++  + V    L A   A  L   L  G   R+A   +LR +M+SGA GCE+++SGKL   R++  KF  GY+  SG+P  E +D+
Sbjct:    4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIRKLTRDLERRFRLDNPQIDV--QDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDT 164          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.947e-21
Identity = 54/161 (33.54%), Postives = 92/161 (57.14%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586
            ++ FV +G+    ++E L +EL   GY G++V+VTP+ T +++ A R   V+G  G+ +R +T  ++ +F      VE+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GAQG EV +SGK+R  R+ + KF DGY+   G+P  +++
Sbjct:    3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHV 161          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.947e-21
Identity = 52/162 (32.10%), Postives = 94/162 (58.02%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            ++KFV DG   A ++E   ++L+  GY G+++  TP+ T+I + A +   V+G+ G+ IR+LT  V + +      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCE+++SGKL   R++  K  +GY+  +G+PV++ +D
Sbjct:    4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIRKLTRDVDRLYDLDNPQID--AQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVD 163          
The following BLAST results are available for this feature:
BLAST of CN188661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_METLZ9.396e-2337.6530S ribosomal protein S3P OS=Methanocorpusculum la... [more]
RS3_METJA1.227e-2237.6530S ribosomal protein S3P OS=Methanocaldococcus ja... [more]
RS3_METHJ1.603e-2238.8930S ribosomal protein S3P OS=Methanospirillum hung... [more]
RS3_METMJ2.734e-2235.8030S ribosomal protein S3P OS=Methanoculleus marisn... [more]
RS3_HALMA3.570e-2232.7430S ribosomal protein S3P OS=Haloarcula marismortu... [more]
RS3_METB66.090e-2233.3330S ribosomal protein S3P OS=Methanoregula boonei ... [more]
RS3_NATPD7.954e-2232.7430S ribosomal protein S3P OS=Natronomonas pharaoni... [more]
RS3_METTP7.954e-2235.5830S ribosomal protein S3P OS=Methanosaeta thermoph... [more]
RS3_METTH3.947e-2133.5430S ribosomal protein S3P OS=Methanobacterium ther... [more]
RS3_METBU3.947e-2132.1030S ribosomal protein S3P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188661 ID=CN188661; Name=CN188661; organism=Citrus sinensis; type=EST; length=603bp
TCGCAAACACCTATTAAGGCGGACTAGAGAGTGAGAGACTCCCAAAGCGC
CCTAACAGCAGCGGTGTTGGATTCTGAGAAACATGGCTACTCAGATTAGC
AAGAAGCGGAAATTTGTTGCCGACGGTGTCTTCTTTGCGGAGCTTAATGA
AGTTCTGACCCGAGAGCTTGCGGAAGATGGATACTCTGGTGTCGAAGTTA
GGGTTACACCTGTGCGCACTGAGATCATCATTAGGGCCACTCGCACTCAG
AATGTTCTCGGTGAGAAGGGAAGAAGGATTAGGGAGCTTACTTCTGTTGT
TCAGAAACGATTCAAGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGA
AAGTTAACAATAGGGGTCTCTGTGCCGTTGCTCAGGCTGAGTCTCTGCGT
TACAAGCTTCTTGGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCT
GAGATTTATCATGGAGAGTGGTGCCCAGGGATGTGAGGTTATTGTGAGTG
GAAAGCTCCGGGCTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTAC
ATGATATCCTCAGGTCAACCTGTGAATGAATACATCGACTCCGCTGTAAG
ACA
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