CN188661

Overview
NameCN188661
Unique NameCN188661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 57/162 (35.19%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            ++KFV +G   A ++E    +L   GY G+E+  TP+ T+I ++A +   ++G+ G+ IR  T  +  RFK     +++  ++V    L A   A  L   L  G   R+A    L+ IM+SGA GCEVI++GKL   R +  KF  GY+   G+PV E +D
Sbjct:    4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVD 163          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 53/161 (32.92%), Postives = 90/161 (55.90%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586
            ++ FV +G+    ++E L  +L   GY G++++VTPV T +I+ A +   V+G  G+ +R +T  ++  F      VE+  ++V+   L     A  +   L  G+  RR  Y ++R IM +GAQG EV +SGK+R  R+   KF +GY+   G+P  +Y+
Sbjct:    3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYV 161          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_THEPD (30S ribosomal protein S3P OS=Thermofilum pendens (strain Hrk 5) GN=rps3p PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 55/164 (33.54%), Postives = 91/164 (55.49%), Query Frame = 2
Query:  107 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 598
            RK ++ G+ +  LNE L R+L    Y   +   TP+ T++I+ A     V+G KG  I+ +  V+++ F      +++   +V N+ L A   A  +   L+ G+  RRA    L  IM +GA+G E+++SGKL +QR ++ KF  GY+  SG+P  E +D A+
Sbjct:    6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAI 167          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_SULSO (30S ribosomal protein S3P OS=Sulfolobus solfataricus GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20
Identity = 58/165 (35.15%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 598
            KR F+   +   +++E L ++     Y+GVEV  TP+ T +II A R   ++G  GR I++L  + +K F      + +    V N  L A   A  L   L  G   RRA +  +R IM +GA G E+I+SGKL  +RA+  K K+G +  SGQ + + ID A+
Sbjct:    5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAI 167          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_SULAC (30S ribosomal protein S3P OS=Sulfolobus acidocaldarius GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 598
            KR F+        ++E L ++     Y+GVE+  TP+ T +II A R   ++G+ G+ I++L  V++K F      + + A +  N  L A   A  L   L  G   RRA +  +R IM SGA G EVIVSGKL ++RAK  K K+G +  SGQ + + ID A+
Sbjct:    5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAI 167          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20
Identity = 52/162 (32.10%), Postives = 91/162 (56.17%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            +R F+ + V    ++E L  +L   GYS ++V+ TP+ T I + A +   V+G KG+ ++ELT  +    K+  N  ++  +++ +  L A   A+ +   L  G+  RR  +  +R +M  GA+G  VIVSGKL  +R+++ K+ +GYM   G+P  E +D
Sbjct:    3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVD 162          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 51/160 (31.87%), Postives = 94/160 (58.75%), Query Frame = 2
Query:  110 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589
            +F+  G+  ++++E    ELA  GY G+E+  TP+  +I+++A +   V+G+ G+ IR++T+ +++RF   +  +++  ++V    L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R +  KF  GY+  +G+P  E +D
Sbjct:    6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVD 163          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.445e-20
Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 595
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  + K +      +E+  ++V N  L        +   L  G+  RR  +  +R +M SGA+G  +IVSGKL  +R+++ KF DGYM   G+P    ++ +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.723e-20
Identity = 51/156 (32.69%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQP 571
            ++ FV +G+    ++E L +EL   GY G++V++TP+ T +++ A R   V+G  G+ +R +T+ ++  F      +E+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GAQG EV +SGK+R  R+   KF +GY+   G+P
Sbjct:    3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEP 156          
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.658e-19
Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 2
Query:  107 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586
            +KFV  G+   EL+E L  EL   GY G+ ++  P  T+II    R    +G +GR IR +   VQ+RF      V +  +++ +  L     A  L   L  G+  RRA YG LR IM +GA+G  +I+SGKL   RA++ KF +G +   G+P +EY+
Sbjct:   12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYM 170          
The following BLAST results are available for this feature:
BLAST of CN188661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_UNCMA1.149e-2035.1930S ribosomal protein S3P OS=Uncultured methanogen... [more]
RS3_METST1.149e-2032.9230S ribosomal protein S3P OS=Methanosphaera stadtm... [more]
RS3_THEPD2.559e-2033.5430S ribosomal protein S3P OS=Thermofilum pendens (... [more]
RS3_SULSO3.342e-2035.1530S ribosomal protein S3P OS=Sulfolobus solfataric... [more]
RS3_SULAC3.342e-2036.9730S ribosomal protein S3P OS=Sulfolobus acidocalda... [more]
RS3_META33.342e-2032.1030S ribosomal protein S3P OS=Methanococcus aeolicu... [more]
RS3_HALSA4.364e-2031.8830S ribosomal protein S3P OS=Halobacterium salinar... [more]
RS3_METM57.445e-2031.1030S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METS39.723e-2032.6930S ribosomal protein S3P OS=Methanobrevibacter sm... [more]
RS3_METKA1.658e-1936.8830S ribosomal protein S3P OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188661 ID=CN188661; Name=CN188661; organism=Citrus sinensis; type=EST; length=603bp
TCGCAAACACCTATTAAGGCGGACTAGAGAGTGAGAGACTCCCAAAGCGC
CCTAACAGCAGCGGTGTTGGATTCTGAGAAACATGGCTACTCAGATTAGC
AAGAAGCGGAAATTTGTTGCCGACGGTGTCTTCTTTGCGGAGCTTAATGA
AGTTCTGACCCGAGAGCTTGCGGAAGATGGATACTCTGGTGTCGAAGTTA
GGGTTACACCTGTGCGCACTGAGATCATCATTAGGGCCACTCGCACTCAG
AATGTTCTCGGTGAGAAGGGAAGAAGGATTAGGGAGCTTACTTCTGTTGT
TCAGAAACGATTCAAGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGA
AAGTTAACAATAGGGGTCTCTGTGCCGTTGCTCAGGCTGAGTCTCTGCGT
TACAAGCTTCTTGGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCT
GAGATTTATCATGGAGAGTGGTGCCCAGGGATGTGAGGTTATTGTGAGTG
GAAAGCTCCGGGCTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTAC
ATGATATCCTCAGGTCAACCTGTGAATGAATACATCGACTCCGCTGTAAG
ACA
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