CN188661
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20 Identity = 57/162 (35.19%), Postives = 89/162 (54.94%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589 ++KFV +G A ++E +L GY G+E+ TP+ T+I ++A + ++G+ G+ IR T + RFK +++ ++V L A A L L G R+A L+ IM+SGA GCEVI++GKL R + KF GY+ G+PV E +D Sbjct: 4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVD 163
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20 Identity = 53/161 (32.92%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586 ++ FV +G+ ++E L +L GY G++++VTPV T +I+ A + V+G G+ +R +T ++ F VE+ ++V+ L A + L G+ RR Y ++R IM +GAQG EV +SGK+R R+ KF +GY+ G+P +Y+ Sbjct: 3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYV 161
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_THEPD (30S ribosomal protein S3P OS=Thermofilum pendens (strain Hrk 5) GN=rps3p PE=3 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20 Identity = 55/164 (33.54%), Postives = 91/164 (55.49%), Query Frame = 2 Query: 107 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 598 RK ++ G+ + LNE L R+L Y + TP+ T++I+ A V+G KG I+ + V+++ F +++ +V N+ L A A + L+ G+ RRA L IM +GA+G E+++SGKL +QR ++ KF GY+ SG+P E +D A+ Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAI 167
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_SULSO (30S ribosomal protein S3P OS=Sulfolobus solfataricus GN=rps3p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20 Identity = 58/165 (35.15%), Postives = 88/165 (53.33%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 598 KR F+ + +++E L ++ Y+GVEV TP+ T +II A R ++G GR I++L + +K F + + V N L A A L L G RRA + +R IM +GA G E+I+SGKL +RA+ K K+G + SGQ + + ID A+ Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAI 167
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_SULAC (30S ribosomal protein S3P OS=Sulfolobus acidocaldarius GN=rps3p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20 Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 598 KR F+ ++E L ++ Y+GVE+ TP+ T +II A R ++G+ G+ I++L V++K F + + A + N L A A L L G RRA + +R IM SGA G EVIVSGKL ++RAK K K+G + SGQ + + ID A+ Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAI 167
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20 Identity = 52/162 (32.10%), Postives = 91/162 (56.17%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589 +R F+ + V ++E L +L GYS ++V+ TP+ T I + A + V+G KG+ ++ELT + K+ N ++ +++ + L A A+ + L G+ RR + +R +M GA+G VIVSGKL +R+++ K+ +GYM G+P E +D Sbjct: 3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVD 162
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3) HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20 Identity = 51/160 (31.87%), Postives = 94/160 (58.75%), Query Frame = 2 Query: 110 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 589 +F+ G+ ++++E ELA GY G+E+ TP+ +I+++A + V+G+ G+ IR++T+ +++RF + +++ ++V L A A+ L L G R+A + + IMESGA G E+++SGK+ R + KF GY+ +G+P E +D Sbjct: 6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVD 163
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 7.445e-20 Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 595 +R FV + V ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++ELT + K + +E+ ++V N L + L G+ RR + +R +M SGA+G +IVSGKL +R+++ KF DGYM G+P ++ + Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 9.723e-20 Identity = 51/156 (32.69%), Postives = 88/156 (56.41%), Query Frame = 2 Query: 104 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQP 571 ++ FV +G+ ++E L +EL GY G++V++TP+ T +++ A R V+G G+ +R +T+ ++ F +E+ ++V+ L A + L G+ RR Y +R IM +GAQG EV +SGK+R R+ KF +GY+ G+P Sbjct: 3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEP 156
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.658e-19 Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 2 Query: 107 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 586 +KFV G+ EL+E L EL GY G+ ++ P T+II R +G +GR IR + VQ+RF V + +++ + L A L L G+ RRA YG LR IM +GA+G +I+SGKL RA++ KF +G + G+P +EY+ Sbjct: 12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYM 170 The following BLAST results are available for this feature:
BLAST of CN188661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188661 ID=CN188661; Name=CN188661; organism=Citrus sinensis; type=EST; length=603bpback to top |