CN181651

Overview
NameCN181651
Unique NameCN181651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181651 vs. ExPASy Swiss-Prot
Match: DHSA_RICPR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia prowazekii GN=sdhA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 53/171 (30.99%), Postives = 77/171 (45.03%), Query Frame = -2
Query:  191 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-NILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG---WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 691
            V G+   GE AC  +HGANRL SNSLL+ +VF R +   + +  K  S            ++ +       + NIL    ++R ++Q  M  +V + R+   L      I E+   ++          W    V  EA E+ NL   A + V SA AR ESRG H   D+P
Sbjct:  383 VNGIMAIGEAACVSVHGANRLGSNSLLDLVVFGRSSALKAAELIKPASPHKPLQKETLEKIINRFDKVRYANGNIL--VADLRLKMQRTMQSHVSVFRTQKLLDEGVGMISEIRNRYKDIKINDKSLIWNSDLV--EALELDNLLDQALVTVCSAAARKESRGAHAREDYP 549          
BLAST of CN181651 vs. ExPASy Swiss-Prot
Match: DHSA_RICBR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 56/173 (32.37%), Postives = 79/173 (45.66%), Query Frame = -2
Query:  191 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH---NILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG---WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 691
            V+GL   GE AC  +HGANRL SNSLL+ +VF R A   + +  K  S     S      ++  S    + H   NI     ++R ++Q  M  +  + R+   L      I E+ + ++          W    V  EA E+ NL   A + V SA AR ESRG H   D+P
Sbjct:  383 VKGLMSIGEAACVSVHGANRLGSNSLLDLVVFGRSAALKAAELIKPASPHKPVSEEALEKII--SRFDKIRHSSGNI--SVADLRLKMQRTMQSHASVFRTQEVLDEGAEMISEIRSGYKDIKVNDKSLIWNSDLV--EALELDNLLDQALVTVYSAAARKESRGAHAREDYP 549          
BLAST of CN181651 vs. ExPASy Swiss-Prot
Match: DHSA_RICTY (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia typhi GN=sdhA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 53/173 (30.64%), Postives = 78/173 (45.09%), Query Frame = -2
Query:  191 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH---NILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG---WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 691
            V G+   GE AC  +HGANRL SNSLL+ +VF R +   + +  K  S            ++ +     + H   N+L    ++R ++Q  M  +V + R+   L      I E+   ++          W    V  EA E+ NL   A + V SA AR ESRG H   D+P
Sbjct:  383 VNGIMAIGEAACVSVHGANRLGSNSLLDLVVFGRSSALKAAELIKPVSPHKPLKKEILEKIINRF--DKIRHANGNVL--VADLRLQMQRTMQSHVSVFRTQELLDEGARMISEIRNRYKDIKINDKSLIWNSDLV--EALELDNLLDQALVTVYSAAARKESRGAHAREDYP 549          
BLAST of CN181651 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 55/181 (30.39%), Postives = 85/181 (46.96%), Query Frame = -2
Query:  173 VRGLYVAGEVACTGLHGANRLASNSLLEALVFAR----RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG----LEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 691
            + GL  AGE AC  +HGANRL +NSLL+ +VF R    R  + S   +K   ++  A     +T+       N   N    T  +R  +Q IM     + R+  +L+     ID+    WE++      +++ +     +E  E+ NL   A + + SA AR ESRG H   DF   E+ +
Sbjct:  422 IPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEISKPGEKQKPLEKDAGE---KTIAWLDRLRN--SNGSLPTSTIRLNMQRIMQNNAAVFRTQETLEEGCQLIDK---AWESFGDVQVKDRSMIWNSDLIETLELENLLINASITMHSAEARKESRGAHAREDFTKREDGE 594          
BLAST of CN181651 vs. ExPASy Swiss-Prot
Match: DHSA_XENTR (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Xenopus tropicalis GN=sdha PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 53/170 (31.18%), Postives = 79/170 (46.47%), Query Frame = -2
Query:  194 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARR-AVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY-LFEHG--WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF 691
            V GLY  GE A   +HGANRL +NSLL+ +VF R  A+  +   K    +     N    +V   +L      N   RT E+R  +Q  M  +  + R+ + L+    ++  + +  +    F+ G  W    V  E  E++NL  CA   +  A AR ESRG H   D+
Sbjct:  435 VPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALSIAESCKPGEPVPSIKENAGEESVA--NLDKLRFTNGSTRTSELRINMQKTMQNHAAVFRTGSVLKEGCEKLSAINSTMDDIKTFDRGIVWNTDLV--ETLELQNLMLCALQTIYGAEARKESRGAHAREDY 600          
The following BLAST results are available for this feature:
BLAST of CN181651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
DHSA_RICPR3.011e-1130.99Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICBR3.011e-1132.37Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICTY5.136e-1130.64Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA1_ARATH5.136e-1130.39Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_XENTR6.708e-1131.18Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181651 ID=CN181651; Name=CN181651; organism=Citrus sinensis; type=EST; length=719bp
TTTAATTTGAACTCAAATGGCTAGCTAAAGAAAACCACTTCAAAACCATT
TAGTCAAATCCCAGGGGCAGAAACAGATCCTTGCACTTACCTTAACATAC
AGGCAACTTATGTAGTTGTCTCGAACTCCATGTGCAATTTACAAGTGAAG
GGAGAATAATTGTTGGCAGCCTTTTATTTTCCTCAACATGCGGAAAATCA
ACCATGTAATGAAGTCCACGGCTTTCATGCCTAGCAAGAGCACTGCTGAC
CACCAACTTTGCACAACAAAAGAGGTTCCTCATTTCACAAGCCTCAAGGC
CCACAAATGTCTGCTCCCAGCCATGCTCAAACAAGTATGTCTCCCATTCA
GCTTCCAACTCATCAATTCTCCATTCTGCAGTTTGTAGACTCGTTGTAGA
CCGAACAATTCCCACATACCTCCACATGATTGACTGCAGTTCTTTCCGCA
CTTCCTTTGTCCTTCTCAAAATATTGTGCATTACATTACAGCCAAGTGAC
TTTGGTACAACAGTTCGGGTCCACCAATTTGAAGCACTGAGATCAATGCT
AGTGCTCTTCTTGTGATCAATTGAGGGCTGGACAGCTCTTCGTGCAAAAA
CTAATGCCTCAAGCAATGAATTACTGGCTAATCGGTTTGCTCCATGCAAA
CCTGTACATGCAACCTCACCTGCTACATACAGGCCTCGCACATTTGTTTC
CCCTTGGAGCCCAGCACGG
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