CN181646

Overview
NameCN181646
Unique NameCN181646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_CLOAB (Ribosome-recycling factor OS=Clostridium acetobutylicum GN=frr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  454 IGPTVKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            I   +KE    +M  +I AL +ELT ++ GRA+P MLD I V+  G   PLN LA +SV +S+ L I P+D + +K +E AI+ S LGLN
Sbjct:    2 ISDIIKELE-EKMTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDKSAMKSIEKAILISDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_THISH (Ribosome-recycling factor OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 35/87 (40.23%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  463 TVKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            ++K+ A ++M  +I +L  EL K+RTGRA   +LDH++VE  G  +P++ +A V+V D++TL++ P++   + ++E AI++S LGLN
Sbjct:    4 SIKKDAKARMGKSIESLRNELAKIRTGRAHTSLLDHVMVEYYGSDVPISQVANVNVEDARTLTVTPWEKTMVSKVEKAIMTSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SHISS (Ribosome-recycling factor OS=Shigella sonnei (strain Ss046) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SHIFL (Ribosome-recycling factor OS=Shigella flexneri GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SHIF8 (Ribosome-recycling factor OS=Shigella flexneri serotype 5b (strain 8401) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SHIDS (Ribosome-recycling factor OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SHIBS (Ribosome-recycling factor OS=Shigella boydii serotype 4 (strain Sb227) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SHIB3 (Ribosome-recycling factor OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SALTY (Ribosome-recycling factor OS=Salmonella typhimurium GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +ME  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SALTI (Ribosome-recycling factor OS=Salmonella typhi GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +ME  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLN 90          
The following BLAST results are available for this feature:
BLAST of CN181646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
RRF_CLOAB3.269e-1345.56Ribosome-recycling factor OS=Clostridium acetobuty... [more]
RRF_THISH4.269e-1340.23Ribosome-recycling factor OS=Thioalkalivibrio sp. ... [more]
RRF_SHISS4.269e-1344.19Ribosome-recycling factor OS=Shigella sonnei (stra... [more]
RRF_SHIFL4.269e-1344.19Ribosome-recycling factor OS=Shigella flexneri GN=... [more]
RRF_SHIF84.269e-1344.19Ribosome-recycling factor OS=Shigella flexneri ser... [more]
RRF_SHIDS4.269e-1344.19Ribosome-recycling factor OS=Shigella dysenteriae ... [more]
RRF_SHIBS4.269e-1344.19Ribosome-recycling factor OS=Shigella boydii serot... [more]
RRF_SHIB34.269e-1344.19Ribosome-recycling factor OS=Shigella boydii serot... [more]
RRF_SALTY4.269e-1345.35Ribosome-recycling factor OS=Salmonella typhimuriu... [more]
RRF_SALTI4.269e-1345.35Ribosome-recycling factor OS=Salmonella typhi GN=f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181646 ID=CN181646; Name=CN181646; organism=Citrus sinensis; type=EST; length=723bp
CCCCGGGCTGCAGGCACAAATGTTGGGTCGATTGCAATAAGGTTTAGCAG
CAAACGGAGGATTTTATAATAACAAACAATAAACCCTAAACCCTCAAAAA
CAGAAAACCACTAAAACCCTAAATGGAATAGTTGGAAGTCTATCTATTGT
TTCATTTCTTCAAAACACAATTAAACAAGAAATAAATAACGAAAAATCAT
GGCAATGCATCTAAGACGAGCAATCTCTAATCGAAACGCAACACTGCTTC
TTAGAAATGGAAGCTCTTCTCTTCAATCACAGCGAAGCTGGTTCCATACT
CCCTGCTCCCGCAGTAATGGGTTCTTTAGGACCCGGTACAGTGATCCAAG
TCTTTCAGCTTTCGGCTTCATGCAAGATTATCGTCGAGGATTCGCCAAAG
GCAAAAGATCAAAGGATGATTCTGGTGCTGGAAGTACAGTTGAAATTGTG
GATATTGGTCCCACTGTTAAGGAAACTGCTGTCTCACAGATGGAAGCAGC
AATAGTTGCATTGTCACGCGAACTGACCAAATTAAGAACAGGAAGGGCGT
CACCAGGAATGCTTGACCACATTATTGTTGAAACTGGTGGAGTGAAGATG
CCCTTGAATCATTTAGCTGTTGTTTCAGTGCTAGATTCTAAGACCTTGTC
AATTAATCCATATGATCCAAATACCCTGAAAGAGTTAGAGAGTGCCATTG
TTTCATCTCCGCTAGGGTTAAAT
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