CN181646

Overview
NameCN181646
Unique NameCN181646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SALA4 (Ribosome-recycling factor OS=Salmonella agona (strain SL483) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +ME  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ROSS1 (Ribosome-recycling factor OS=Roseiflexus sp. (strain RS-1) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGL 720
            V   A S+M+ A  AL   L  +RTGRASP +++H+ VE  G  +PLN LA ++V + + L I P+D NT+K +  AI++S LG+
Sbjct:    5 VLREAESRMKKATEALRNHLATIRTGRASPALVEHLHVEAYGATLPLNQLATITVPEPRLLVIQPFDANTVKAISKAIMNSELGI 89          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ROSCS (Ribosome-recycling factor OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGL 720
            V   A S+M+ A  AL   L  +RTGRASP +++H+ VE  G  +PLN LA ++V + + L I P+D NT+K +  AI++S LG+
Sbjct:    5 VLREAESRMKKATEALRNHLATIRTGRASPALVEHLHVEAYGATLPLNQLATITVPEPRMLVIQPFDANTVKAISKAIMNSELGI 89          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_PSEPK (Ribosome-recycling factor OS=Pseudomonas putida (strain KT2440) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A  +M  +I ALSR L  +RTGRA P +LD + V   G +MPLN +A ++V D++TL I  +D N    +E AI++S LGLN
Sbjct:    5 IKKDAQERMGKSIEALSRNLAAIRTGRAHPSILDSVKVTAWGSEMPLNQVAAITVEDARTLKIVAHDKNLSAAIEKAILTSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_PSEP1 (Ribosome-recycling factor OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A  +M  +I ALSR L  +RTGRA P +LD + V   G +MPLN +A ++V D++TL I  +D N    +E AI++S LGLN
Sbjct:    5 IKKDAQERMGKSIEALSRNLAAIRTGRAHPSILDSVKVTAWGSEMPLNQVAAITVEDARTLKIVAHDKNLSAAIEKAILTSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_LEPCP (Ribosome-recycling factor OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 34/86 (39.53%), Postives = 60/86 (69.77%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A ++M  ++ A   EL K+RTGRA PG+LD + V+  G  +PL+ +A V+++D++T+S+ P++ +  +++E AI  S LGLN
Sbjct:    6 IKKNAEAKMAKSVEAFKNELQKIRTGRAHPGILDQVHVDYYGSNLPLSQVANVTLIDARTISVQPWEKSMAQKIEKAIRESDLGLN 91          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ESCF3 (Ribosome-recycling factor OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ECOUT (Ribosome-recycling factor OS=Escherichia coli (strain UTI89 / UPEC) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ECOSM (Ribosome-recycling factor OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ECOSE (Ribosome-recycling factor OS=Escherichia coli (strain SE11) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90          
The following BLAST results are available for this feature:
BLAST of CN181646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
RRF_SALA44.269e-1345.35Ribosome-recycling factor OS=Salmonella agona (str... [more]
RRF_ROSS14.269e-1343.53Ribosome-recycling factor OS=Roseiflexus sp. (stra... [more]
RRF_ROSCS4.269e-1343.53Ribosome-recycling factor OS=Roseiflexus castenhol... [more]
RRF_PSEPK4.269e-1345.35Ribosome-recycling factor OS=Pseudomonas putida (s... [more]
RRF_PSEP14.269e-1345.35Ribosome-recycling factor OS=Pseudomonas putida (s... [more]
RRF_LEPCP4.269e-1339.53Ribosome-recycling factor OS=Leptothrix cholodnii ... [more]
RRF_ESCF34.269e-1344.19Ribosome-recycling factor OS=Escherichia fergusoni... [more]
RRF_ECOUT4.269e-1344.19Ribosome-recycling factor OS=Escherichia coli (str... [more]
RRF_ECOSM4.269e-1344.19Ribosome-recycling factor OS=Escherichia coli (str... [more]
RRF_ECOSE4.269e-1344.19Ribosome-recycling factor OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181646 ID=CN181646; Name=CN181646; organism=Citrus sinensis; type=EST; length=723bp
CCCCGGGCTGCAGGCACAAATGTTGGGTCGATTGCAATAAGGTTTAGCAG
CAAACGGAGGATTTTATAATAACAAACAATAAACCCTAAACCCTCAAAAA
CAGAAAACCACTAAAACCCTAAATGGAATAGTTGGAAGTCTATCTATTGT
TTCATTTCTTCAAAACACAATTAAACAAGAAATAAATAACGAAAAATCAT
GGCAATGCATCTAAGACGAGCAATCTCTAATCGAAACGCAACACTGCTTC
TTAGAAATGGAAGCTCTTCTCTTCAATCACAGCGAAGCTGGTTCCATACT
CCCTGCTCCCGCAGTAATGGGTTCTTTAGGACCCGGTACAGTGATCCAAG
TCTTTCAGCTTTCGGCTTCATGCAAGATTATCGTCGAGGATTCGCCAAAG
GCAAAAGATCAAAGGATGATTCTGGTGCTGGAAGTACAGTTGAAATTGTG
GATATTGGTCCCACTGTTAAGGAAACTGCTGTCTCACAGATGGAAGCAGC
AATAGTTGCATTGTCACGCGAACTGACCAAATTAAGAACAGGAAGGGCGT
CACCAGGAATGCTTGACCACATTATTGTTGAAACTGGTGGAGTGAAGATG
CCCTTGAATCATTTAGCTGTTGTTTCAGTGCTAGATTCTAAGACCTTGTC
AATTAATCCATATGATCCAAATACCCTGAAAGAGTTAGAGAGTGCCATTG
TTTCATCTCCGCTAGGGTTAAAT
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