CN181646

Overview
NameCN181646
Unique NameCN181646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ECO7I (Ribosome-recycling factor OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90
[Close]
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ECO5E (Ribosome-recycling factor OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90
[Close]
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ECO57 (Ribosome-recycling factor OS=Escherichia coli O157:H7 GN=frr PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90
[Close]
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ECO55 (Ribosome-recycling factor OS=Escherichia coli (strain 55989 / EAEC) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90
[Close]
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ECO45 (Ribosome-recycling factor OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90
[Close]
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ECO27 (Ribosome-recycling factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90
[Close]
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ECO24 (Ribosome-recycling factor OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLN 90
[Close]
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_DIAST (Ribosome-recycling factor OS=Diaphorobacter sp. (strain TPSY) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 37/86 (43.02%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+T  ++M+ +I A    L K+RTGRA+P +LD I VE  G  +PL+ +A V++LD++T+S+ P++ N   ++E AI  S LGLN
Sbjct:    6 IKKTTEAKMDQSIAAFKNNLAKIRTGRANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLN 91
[Close]
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_CLOTE (Ribosome-recycling factor OS=Clostridium tetani GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +  TA  +M  A++AL ++L  L+ GRA+P MLD I  E  G   PL+ LA +SV +++ L I P+D ++LK +E AI+ S LGLN
Sbjct:    5 IMNTAEDKMSKALLALKKDLASLKAGRANPAMLDKIEAEYYGTMTPLSQLANISVPEARILQIQPWDKSSLKAIEKAILVSDLGLN 90
[Close]
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_CHRSD (Ribosome-recycling factor OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 36/86 (41.86%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A ++M+ ++ AL+    K+RTGRA P +LD + VE  G +MPLN +A V+V D++TL++ P++ + + ++E AI++S LGLN
Sbjct:    5 IKKDADARMKKSVEALNANFHKIRTGRAHPSLLDAVTVEYYGSEMPLNQVASVNVEDARTLAVVPWEKSMVPKVEKAIMTSDLGLN 90
The following BLAST results are available for this feature:
BLAST of CN181646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
RRF_ECO7I4.269e-1344.19Ribosome-recycling factor OS=Escherichia coli O7:K... [more]
RRF_ECO5E4.269e-1344.19Ribosome-recycling factor OS=Escherichia coli O157... [more]
RRF_ECO574.269e-1344.19Ribosome-recycling factor OS=Escherichia coli O157... [more]
RRF_ECO554.269e-1344.19Ribosome-recycling factor OS=Escherichia coli (str... [more]
RRF_ECO454.269e-1344.19Ribosome-recycling factor OS=Escherichia coli O45:... [more]
RRF_ECO274.269e-1344.19Ribosome-recycling factor OS=Escherichia coli O127... [more]
RRF_ECO244.269e-1344.19Ribosome-recycling factor OS=Escherichia coli O139... [more]
RRF_DIAST4.269e-1343.02Ribosome-recycling factor OS=Diaphorobacter sp. (s... [more]
RRF_CLOTE4.269e-1344.19Ribosome-recycling factor OS=Clostridium tetani GN... [more]
RRF_CHRSD4.269e-1341.86Ribosome-recycling factor OS=Chromohalobacter sale... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181646 ID=CN181646; Name=CN181646; organism=Citrus sinensis; type=EST; length=723bp
CCCCGGGCTGCAGGCACAAATGTTGGGTCGATTGCAATAAGGTTTAGCAG
CAAACGGAGGATTTTATAATAACAAACAATAAACCCTAAACCCTCAAAAA
CAGAAAACCACTAAAACCCTAAATGGAATAGTTGGAAGTCTATCTATTGT
TTCATTTCTTCAAAACACAATTAAACAAGAAATAAATAACGAAAAATCAT
GGCAATGCATCTAAGACGAGCAATCTCTAATCGAAACGCAACACTGCTTC
TTAGAAATGGAAGCTCTTCTCTTCAATCACAGCGAAGCTGGTTCCATACT
CCCTGCTCCCGCAGTAATGGGTTCTTTAGGACCCGGTACAGTGATCCAAG
TCTTTCAGCTTTCGGCTTCATGCAAGATTATCGTCGAGGATTCGCCAAAG
GCAAAAGATCAAAGGATGATTCTGGTGCTGGAAGTACAGTTGAAATTGTG
GATATTGGTCCCACTGTTAAGGAAACTGCTGTCTCACAGATGGAAGCAGC
AATAGTTGCATTGTCACGCGAACTGACCAAATTAAGAACAGGAAGGGCGT
CACCAGGAATGCTTGACCACATTATTGTTGAAACTGGTGGAGTGAAGATG
CCCTTGAATCATTTAGCTGTTGTTTCAGTGCTAGATTCTAAGACCTTGTC
AATTAATCCATATGATCCAAATACCCTGAAAGAGTTAGAGAGTGCCATTG
TTTCATCTCCGCTAGGGTTAAAT
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