CN181646

Overview
NameCN181646
Unique NameCN181646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ACISJ (Ribosome-recycling factor OS=Acidovorax sp. (strain JS42) GN=frr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 37/86 (43.02%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+T  ++M+ +I A    L K+RTGRA+P +LD I VE  G  +PL+ +A V++LD++T+S+ P++ N   ++E AI  S LGLN
Sbjct:    6 IKKTTEAKMDQSIAAFKNNLAKIRTGRANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLN 91          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SALPK (Ribosome-recycling factor OS=Salmonella paratyphi A (strain AKU_12601) GN=frr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +ME  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTLTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SALPA (Ribosome-recycling factor OS=Salmonella paratyphi A GN=frr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +ME  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTLTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_PHOLL (Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii GN=frr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A  +ME ++ AL  +++K+RTGRASP +LD IIVE  G   PL  LA V   D++TL+I  +D      +E AI++S LGLN
Sbjct:    5 IKKDAQDRMEKSVEALKNQISKVRTGRASPSLLDGIIVEYYGAPTPLRQLANVIAEDARTLAITVFDRTMTPAIEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_METFK (Ribosome-recycling factor OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=frr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 38/86 (44.19%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            VK TA  +M+ +I AL  +L+K+RTGRA  G+LDH+ VE  G  + +N +A VS+ D++TL++  Y+ N   ++E AI  + LGLN
Sbjct:    5 VKNTAEQKMQKSIEALKADLSKVRTGRAHTGLLDHVQVEYYGSMVAINQVASVSLGDARTLNVQAYEKNMTPKVEKAIRDADLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ENT38 (Ribosome-recycling factor OS=Enterobacter sp. (strain 638) GN=frr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +ME  + A   +++K+RTGRASP +LD IIVE  G   PL  LA V+V D++TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEVRMEKCVEAFKNQISKVRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDTRTLKINVFDRSLGPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_DEHE1 (Ribosome-recycling factor OS=Dehalococcoides ethenogenes (strain 195) GN=frr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 35/85 (41.18%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGL 720
            + + +  +M A++  LS+EL+ +RTGR+SP +++HI VE  GV  P+NHLA ++  D + ++I P+D + L  +E AI+ S LGL
Sbjct:    5 ILQKSEKKMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWDRSCLSAIEKAIMKSDLGL 89          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_POLSJ (Ribosome-recycling factor OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=frr PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 35/86 (40.70%), Postives = 60/86 (69.77%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            VK+ A  +M+ ++ +    LTK+RTGRA+PG+LD + V+  G  +P++ +A VS+LD++T+S++P++     ++E AI  S LGLN
Sbjct:    6 VKQNAEQKMQQSVDSFKNSLTKIRTGRANPGLLDTVHVDYYGSMVPISQVANVSLLDARTISVSPWEKGMGAKIEKAIRDSDLGLN 91          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_LEUCK (Ribosome-recycling factor OS=Leuconostoc citreum (strain KM20) GN=frr PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  478 AVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            A S+M+ A  AL RELT +RTGRA+P +LD I VE  G   PLN +A +SV +++ L I P+D   L+E+  AI  S LGLN
Sbjct:    8 AKSRMQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLITPFDKTALEEIIRAINMSDLGLN 89          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_CHRVO (Ribosome-recycling factor OS=Chromobacterium violaceum GN=frr PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 33/86 (38.37%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K++A  +M+  + A   +L K+RTGRA  G+LDH++V+  G  +P+N +A V+++D++T+ + P++   L ++E AI  S LGLN
Sbjct:    5 IKKSAEQKMQKTLEAFKNDLAKVRTGRAHTGILDHVMVDYYGSDVPVNQVANVTLIDARTIGVQPWEKPMLAKIEKAIRDSDLGLN 90          
The following BLAST results are available for this feature:
BLAST of CN181646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
RRF_ACISJ4.269e-1343.02Ribosome-recycling factor OS=Acidovorax sp. (strai... [more]
RRF_SALPK5.576e-1345.35Ribosome-recycling factor OS=Salmonella paratyphi ... [more]
RRF_SALPA5.576e-1345.35Ribosome-recycling factor OS=Salmonella paratyphi ... [more]
RRF_PHOLL5.576e-1345.35Ribosome-recycling factor OS=Photorhabdus luminesc... [more]
RRF_METFK5.576e-1344.19Ribosome-recycling factor OS=Methylobacillus flage... [more]
RRF_ENT385.576e-1345.35Ribosome-recycling factor OS=Enterobacter sp. (str... [more]
RRF_DEHE15.576e-1341.18Ribosome-recycling factor OS=Dehalococcoides ethen... [more]
RRF_POLSJ7.282e-1340.70Ribosome-recycling factor OS=Polaromonas sp. (stra... [more]
RRF_LEUCK7.282e-1350.00Ribosome-recycling factor OS=Leuconostoc citreum (... [more]
RRF_CHRVO7.282e-1338.37Ribosome-recycling factor OS=Chromobacterium viola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181646 ID=CN181646; Name=CN181646; organism=Citrus sinensis; type=EST; length=723bp
CCCCGGGCTGCAGGCACAAATGTTGGGTCGATTGCAATAAGGTTTAGCAG
CAAACGGAGGATTTTATAATAACAAACAATAAACCCTAAACCCTCAAAAA
CAGAAAACCACTAAAACCCTAAATGGAATAGTTGGAAGTCTATCTATTGT
TTCATTTCTTCAAAACACAATTAAACAAGAAATAAATAACGAAAAATCAT
GGCAATGCATCTAAGACGAGCAATCTCTAATCGAAACGCAACACTGCTTC
TTAGAAATGGAAGCTCTTCTCTTCAATCACAGCGAAGCTGGTTCCATACT
CCCTGCTCCCGCAGTAATGGGTTCTTTAGGACCCGGTACAGTGATCCAAG
TCTTTCAGCTTTCGGCTTCATGCAAGATTATCGTCGAGGATTCGCCAAAG
GCAAAAGATCAAAGGATGATTCTGGTGCTGGAAGTACAGTTGAAATTGTG
GATATTGGTCCCACTGTTAAGGAAACTGCTGTCTCACAGATGGAAGCAGC
AATAGTTGCATTGTCACGCGAACTGACCAAATTAAGAACAGGAAGGGCGT
CACCAGGAATGCTTGACCACATTATTGTTGAAACTGGTGGAGTGAAGATG
CCCTTGAATCATTTAGCTGTTGTTTCAGTGCTAGATTCTAAGACCTTGTC
AATTAATCCATATGATCCAAATACCCTGAAAGAGTTAGAGAGTGCCATTG
TTTCATCTCCGCTAGGGTTAAAT
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