CN181646

Overview
NameCN181646
Unique NameCN181646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_ACIAC (Ribosome-recycling factor OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=frr PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+   ++M+ +IVA    L K+RTGRA+P +LD + VE  G  +PL+ +A VS++D++T+S+ P++     ++E AI  S LGLN
Sbjct:    6 IKKNTEAKMDQSIVAFKNNLAKIRTGRANPALLDSVQVEYYGSMVPLSQVANVSLIDARTISVQPWEKGMGAKIEKAIRESELGLN 91          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_PSEE4 (Ribosome-recycling factor OS=Pseudomonas entomophila (strain L48) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A  +M  +I AL R L  +RTGRA P +LD + V   G  MPLN +A ++V D++TL I  +D N    +E AI++S LGLN
Sbjct:    5 IKKDAQERMGKSIEALGRNLASIRTGRAHPSILDSVKVPAWGSDMPLNQVAAITVEDARTLKIVAHDKNLSAAIEKAILTSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_POLNA (Ribosome-recycling factor OS=Polaromonas naphthalenivorans (strain CJ2) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 33/86 (38.37%), Postives = 60/86 (69.77%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A  +M+ ++ +    LTK+RTGRA+PG+LD + V+  G  +P++ +A V++LD++T+S++P++     ++E AI  S LGLN
Sbjct:    6 IKQQATQKMQQSLESFQHNLTKIRTGRANPGLLDTVHVDYYGSMVPISQVANVALLDARTISVSPWEKGMGAKIEKAIRDSDLGLN 91          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_METCA (Ribosome-recycling factor OS=Methylococcus capsulatus GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 34/86 (39.53%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++    +M+ +I AL  E  K+RTGRA P +L+HI V   G ++PL  +A V+V D+++L++ P++ N ++ +E AI++S LGLN
Sbjct:    5 IQKRTAERMQKSIEALKHEFAKIRTGRAHPSLLEHIRVSYYGNEVPLTQVANVAVEDARSLAVTPWERNMVQAIEKAIMTSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_GEOSW (Ribosome-recycling factor OS=Geobacillus sp. (strain WCH70) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  475 TAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGL 720
            TA  +M+ A+ A +REL  +R GRA+P +L+ + V+  G+  P+  LA +SV +++ L I PYD + +K++E AI+SS LGL
Sbjct:    8 TAKEKMDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLLVIQPYDKSVIKDIEKAILSSDLGL 89          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_DESVV (Ribosome-recycling factor OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  478 AVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            A  +ME AI AL RE ++LRTGRAS  ++D I V+  G   P++ +A V+V DS+ ++I P+D N    +E AI+ S LGLN
Sbjct:   10 AEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDRNAFSLIEKAILKSDLGLN 91          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_DESVH (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=frr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  478 AVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            A  +ME AI AL RE ++LRTGRAS  ++D I V+  G   P++ +A V+V DS+ ++I P+D N    +E AI+ S LGLN
Sbjct:   10 AEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDRNAFSLIEKAILKSDLGLN 91          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_THEM4 (Ribosome-recycling factor OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=frr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  460 PTVKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            P VK+T   +M+ ++ ++  EL KLRTGR SP +L+ I V+  GV  P+N +A V+V + ++L I P++ N L  +E AI +S LGLN
Sbjct:    4 PIVKKTE-EKMKKSVNSIDEELKKLRTGRPSPALLEEIKVDYYGVPTPINQVATVNVTEERSLIIKPWEKNLLNAVEKAIQASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_THEAB (Ribosome-recycling factor OS=Thermosipho africanus (strain TCF52B) GN=frr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 36/88 (40.91%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  460 PTVKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            P +KE  + +M+ ++ A+  EL KLRTGR SP +L+ I ++  GV  P+N +A ++V + ++L I P++ N L  +E AI +S LGLN
Sbjct:    4 PILKEAEL-RMKKSVEAIDEELKKLRTGRPSPALLEEIKIDYYGVPTPINQVATINVTEERSLIIKPWEKNLLSAIEKAIQASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_PSEPG (Ribosome-recycling factor OS=Pseudomonas putida (strain GB-1) GN=frr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A  +M  ++ AL R L  +RTGRA P +LD + V   G +MPLN +A ++V D++TL I  +D N    +E AI++S LGLN
Sbjct:    5 IKKDAQERMTKSLEALGRNLAAIRTGRAHPSILDTVKVTAWGSEMPLNQVAAITVEDARTLKIVAHDKNLSAAIEKAILTSDLGLN 90          
The following BLAST results are available for this feature:
BLAST of CN181646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
RRF_ACIAC1.242e-1240.70Ribosome-recycling factor OS=Acidovorax avenae sub... [more]
RRF_PSEE41.622e-1244.19Ribosome-recycling factor OS=Pseudomonas entomophi... [more]
RRF_POLNA1.622e-1238.37Ribosome-recycling factor OS=Polaromonas naphthale... [more]
RRF_METCA1.622e-1239.53Ribosome-recycling factor OS=Methylococcus capsula... [more]
RRF_GEOSW1.622e-1242.68Ribosome-recycling factor OS=Geobacillus sp. (stra... [more]
RRF_DESVV1.622e-1246.34Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_DESVH1.622e-1246.34Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_THEM42.119e-1243.18Ribosome-recycling factor OS=Thermosipho melanesie... [more]
RRF_THEAB2.119e-1240.91Ribosome-recycling factor OS=Thermosipho africanus... [more]
RRF_PSEPG2.119e-1243.02Ribosome-recycling factor OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181646 ID=CN181646; Name=CN181646; organism=Citrus sinensis; type=EST; length=723bp
CCCCGGGCTGCAGGCACAAATGTTGGGTCGATTGCAATAAGGTTTAGCAG
CAAACGGAGGATTTTATAATAACAAACAATAAACCCTAAACCCTCAAAAA
CAGAAAACCACTAAAACCCTAAATGGAATAGTTGGAAGTCTATCTATTGT
TTCATTTCTTCAAAACACAATTAAACAAGAAATAAATAACGAAAAATCAT
GGCAATGCATCTAAGACGAGCAATCTCTAATCGAAACGCAACACTGCTTC
TTAGAAATGGAAGCTCTTCTCTTCAATCACAGCGAAGCTGGTTCCATACT
CCCTGCTCCCGCAGTAATGGGTTCTTTAGGACCCGGTACAGTGATCCAAG
TCTTTCAGCTTTCGGCTTCATGCAAGATTATCGTCGAGGATTCGCCAAAG
GCAAAAGATCAAAGGATGATTCTGGTGCTGGAAGTACAGTTGAAATTGTG
GATATTGGTCCCACTGTTAAGGAAACTGCTGTCTCACAGATGGAAGCAGC
AATAGTTGCATTGTCACGCGAACTGACCAAATTAAGAACAGGAAGGGCGT
CACCAGGAATGCTTGACCACATTATTGTTGAAACTGGTGGAGTGAAGATG
CCCTTGAATCATTTAGCTGTTGTTTCAGTGCTAGATTCTAAGACCTTGTC
AATTAATCCATATGATCCAAATACCCTGAAAGAGTTAGAGAGTGCCATTG
TTTCATCTCCGCTAGGGTTAAAT
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