CN181646

Overview
NameCN181646
Unique NameCN181646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_PROMH (Ribosome-recycling factor OS=Proteus mirabilis (strain HI4320) GN=frr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A  +M+ ++ AL  ++ K+RTGRASP +LD I+VE  G   PLN +A V   D +TL+I  +D      +E AI++S LGLN
Sbjct:    5 IKKDAQERMDKSVEALKSQINKVRTGRASPNLLDGIVVEYYGAPTPLNQVANVVAEDGRTLAITVFDRTLAPAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_DESAA (Ribosome-recycling factor OS=Desulfatibacillum alkenivorans (strain AK-01) GN=frr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            V E A  +M+ AI AL + L ++RTGRAS  MLD + ++  G   P+N  A V++ +S+ ++I P+D + +K++E AI+ S LGLN
Sbjct:    5 VYEEAREKMDKAIAALEKGLLRVRTGRASLSMLDGVKLDYYGTPTPINQAATVAIPESRLITIQPWDASVIKDIEKAILKSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_COLP3 (Ribosome-recycling factor OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=frr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  472 ETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            E A  +M  +I AL   LTK+RTGRA   +LD+I+VE  G+  PLN +  VSV D++ LSI  +D + +  +E AI+ S LGLN
Sbjct:    7 EDAQDRMGKSIEALKTSLTKIRTGRAHASLLDNIVVEYYGMDTPLNQVGNVSVPDARNLSITVFDKSMISAVEKAIMKSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_PSEMY (Ribosome-recycling factor OS=Pseudomonas mendocina (strain ymp) GN=frr PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A  +M  ++ AL R L  +RTGRA P +LD + V   G  MPLN +A ++V D++TL I  +D N    +E AI++S LGLN
Sbjct:    5 IKKDAQERMGKSLEALDRNLASIRTGRAHPSILDSVKVPAWGSDMPLNQVAAITVEDARTLKIVAHDKNLSAAIEKAIMTSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_DELAS (Ribosome-recycling factor OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=frr PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+T  S+M  +I AL   L ++RTGRA+P +LD I V+  G  +PL+ +A V++LD++T+S+ P++ +   ++E AI  S LGLN
Sbjct:    6 IKKTTESKMGQSIEALKNNLARVRTGRANPSLLDSIHVDYYGSMVPLSQVANVNLLDARTISVQPWEKSMSAKVEKAIRESDLGLN 91          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_CLOBM (Ribosome-recycling factor OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=frr PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            + + A  +M  +IVAL REL  ++ GRA+P MLD I  E  G   PLN LA +SV +++ L I P+D +++  +E AI+ S LGLN
Sbjct:    5 ILKKADEKMGKSIVALKRELASMKAGRANPAMLDRIDAEYYGSMTPLNQLANISVPEARVLLIQPWDKSSMGAIEKAILKSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_CHLSY (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=frr PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  484 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            + ++ A  AL   L  +RTGRAS  +++H+ VE  G+ MPLN LA +SV + + + I PYD N +K +E AI  S LGLN
Sbjct:   11 AHLKKATEALRHHLASIRTGRASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_CHLAA (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=frr PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  484 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            + ++ A  AL   L  +RTGRAS  +++H+ VE  G+ MPLN LA +SV + + + I PYD N +K +E AI  S LGLN
Sbjct:   11 AHLKKATEALRHHLASIRTGRASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_XANCP (Ribosome-recycling factor OS=Xanthomonas campestris pv. campestris GN=frr PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGL 720
            +K+ A ++M  +I AL   LT +RTGRASP +LD+I V+  G   PLN +A +SV + ++L I+ +D   +K++E AI +S LGL
Sbjct:    5 IKQDAQTRMTKSIDALRHSLTTVRTGRASPALLDNIKVKAYGTDTPLNQVASISVSEGRSLVISLFDKGMIKDVEKAIYASDLGL 89          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_XANCB (Ribosome-recycling factor OS=Xanthomonas campestris pv. campestris (strain B100) GN=frr PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGL 720
            +K+ A ++M  +I AL   LT +RTGRASP +LD+I V+  G   PLN +A +SV + ++L I+ +D   +K++E AI +S LGL
Sbjct:    5 IKQDAQTRMTKSIDALRHSLTTVRTGRASPALLDNIKVKAYGTDTPLNQVASISVSEGRSLVISLFDKGMIKDVEKAIYASDLGL 89          
The following BLAST results are available for this feature:
BLAST of CN181646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
RRF_PROMH2.119e-1243.02Ribosome-recycling factor OS=Proteus mirabilis (st... [more]
RRF_DESAA2.119e-1241.86Ribosome-recycling factor OS=Desulfatibacillum alk... [more]
RRF_COLP32.119e-1246.43Ribosome-recycling factor OS=Colwellia psychreryth... [more]
RRF_PSEMY2.767e-1243.02Ribosome-recycling factor OS=Pseudomonas mendocina... [more]
RRF_DELAS2.767e-1241.86Ribosome-recycling factor OS=Delftia acidovorans (... [more]
RRF_CLOBM2.767e-1244.19Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CHLSY2.767e-1245.00Ribosome-recycling factor OS=Chloroflexus aurantia... [more]
RRF_CHLAA2.767e-1245.00Ribosome-recycling factor OS=Chloroflexus aurantia... [more]
RRF_XANCP3.614e-1243.53Ribosome-recycling factor OS=Xanthomonas campestri... [more]
RRF_XANCB3.614e-1243.53Ribosome-recycling factor OS=Xanthomonas campestri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181646 ID=CN181646; Name=CN181646; organism=Citrus sinensis; type=EST; length=723bp
CCCCGGGCTGCAGGCACAAATGTTGGGTCGATTGCAATAAGGTTTAGCAG
CAAACGGAGGATTTTATAATAACAAACAATAAACCCTAAACCCTCAAAAA
CAGAAAACCACTAAAACCCTAAATGGAATAGTTGGAAGTCTATCTATTGT
TTCATTTCTTCAAAACACAATTAAACAAGAAATAAATAACGAAAAATCAT
GGCAATGCATCTAAGACGAGCAATCTCTAATCGAAACGCAACACTGCTTC
TTAGAAATGGAAGCTCTTCTCTTCAATCACAGCGAAGCTGGTTCCATACT
CCCTGCTCCCGCAGTAATGGGTTCTTTAGGACCCGGTACAGTGATCCAAG
TCTTTCAGCTTTCGGCTTCATGCAAGATTATCGTCGAGGATTCGCCAAAG
GCAAAAGATCAAAGGATGATTCTGGTGCTGGAAGTACAGTTGAAATTGTG
GATATTGGTCCCACTGTTAAGGAAACTGCTGTCTCACAGATGGAAGCAGC
AATAGTTGCATTGTCACGCGAACTGACCAAATTAAGAACAGGAAGGGCGT
CACCAGGAATGCTTGACCACATTATTGTTGAAACTGGTGGAGTGAAGATG
CCCTTGAATCATTTAGCTGTTGTTTCAGTGCTAGATTCTAAGACCTTGTC
AATTAATCCATATGATCCAAATACCCTGAAAGAGTTAGAGAGTGCCATTG
TTTCATCTCCGCTAGGGTTAAAT
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