CN181640

Overview
NameCN181640
Unique NameCN181640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6950 contig Csv1_Contig6950:149..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: HCD2_MOUSE (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Mus musculus GN=Hsd17b10 PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 61/211 (28.91%), Postives = 95/211 (45.02%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPI-PFHE--DQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM-----QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGV----VLFTRSLTPYKSKGIRINVLCPEFVETEL 673
            GL A VTGGASG   A +  L G+G    ++D+ + +G+  A             LG  S +F   +VT+ ++  AA       +G +D+ +N AGI+  I  +H+  ++      ++  ++VNL+   +  +   G M         + GVIIN  S A          YSASKGG+    +   R L P    GIR+  + P    T L
Sbjct:   10 GLVAVVTGGASGPWLATAKRLVGQGATAVLLDVPDSEGESQA-----------KKLG-ESCIFAPANVTSEKEIQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHQKKNKIHTLEDFQRVINVNLIGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIDGMTLPIARDLAP---TGIRVVTIAPGLFATPL 205          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: BDHA_RALEH (D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hbdH1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 59/203 (29.06%), Postives = 91/203 (44.83%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTR-SLTPYKSKGIRINVLCPEFVETELALK 682
            G +A VTG  SGIG  ++ ALA +G  + V       G   AA  E   A     +G+  A     D++   +         + +GG DI +N+AGI +     +   +    W   + +NL +    T+ A+  M+  K  G IIN+ S+ GL        Y A+K G+V FT+ +       G+  N +CP +V T L  K
Sbjct:    4 GKTALVTGSTSGIGLGIAKALAAQGANIIVNGF----GDADAAKAEIAQAGQGIRVGYHGA-----DMSKAAEIEDMMRYAQSDFGGADILVNNAGIQHVAAIEDFPPE---RWDAIIAINLTSAFHTTRLALPGMK-QKDWGRIINVASTHGLVASAQKSAYVAAKHGIVGFTKVTALETAQTGVTANAICPGWVLTPLVQK 193          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: DHSO_RHOSH (Sorbitol dehydrogenase OS=Rhodobacter sphaeroides GN=polS PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 55/199 (27.64%), Postives = 87/199 (43.72%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETE 670
            G +A +TG A GIGRA + A   +G  V + D++ E  +  AA +             P+A  I  DVT+         + +  +G +DI +N+A + +  P  E   +   S+     +N+   +   Q     M A  + G IINM S AG        +Y A+K  V+  T+S        GI +N + P  V+ E
Sbjct:    5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG------------PAACAIALDVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRE---SYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGE 188          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: ACT3_STRCO (Putative ketoacyl reductase OS=Streptomyces coelicolor GN=actIII PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 60/201 (29.85%), Postives = 90/201 (44.78%), Query Frame = 2
Query:   86 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQ---KAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETELA 676
            A VTG  SGIG  ++  L  +G+ V V    EE  +     + +   +              CDV +  +  A     V  YG +D+ +N+AG        E   +    W   ++ NL  V   T+   KA G+++  +  G I+N+ S+ G         YSASK GVV FT++L       GI +N +CP FVET +A
Sbjct:    9 ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRT---------CDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADE---LWLDVVETNLTGVFRVTKQVLKAGGMLE--RGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMA 195          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: Y4MP_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4mP OS=Rhizobium sp. (strain NGR234) GN=NGR_a02430 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 57/207 (27.54%), Postives = 101/207 (48.79%), Query Frame = 2
Query:   68 LKPGLSAFVTGGAS--GIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLY--PFYTDPIYSASKGGVVLFTRSLT-PYKSKGIRINVLCPEFVETEL 673
            L  G +A ++G AS  GIGRA +   A  G  V ++D++ ++ K  A  +       H  L        RCDV +     +A ++ ++ +G  +I IN+AGI+ P+    D +D    W+  + VN+  V++ +Q  I  M+     G I  M S +       +  P YSA+K GV+   +++   +    IR+N + P  ++T++
Sbjct:    2 LLKGKTAVISGAASKRGIGRATAELFASHGARVAILDINADEAKAAAGDLPPVEHGAHIGL--------RCDVADRASCTSASDEVLSAFGVANILINNAGITQPVK-TLDISDA--DWQRIVAVNMTGVLNLSQVFIPNMR-QNGGGSIACMSSVSAQRGGGIFGGPHYSAAKAGVLGLAKAMAREFGPDSIRVNCVTPGLIQTDI 196          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: LVR_LEIAQ (Levodione reductase OS=Leifsonia aquatica GN=lvr PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 59/199 (29.65%), Postives = 94/199 (47.24%), Query Frame = 2
Query:   92 VTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIR--CDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRF--TLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTR-SLTPYKSKGIRINVLCPEFVETEL 673
            +TGG SG+GRA ++ LA +G  +++VD+S E G E +     E A        P A  +    DV++     A        +G +D   N+AGI       ++ T+   +  F   + +NL  V    +K + IM+  +  G+++N  S  G+        Y+A+K GVV  TR S   Y   GIRIN + P  + T +
Sbjct:   18 ITGGGSGLGRATAVRLAAEGAKLSLVDVSSE-GLEASKAAVLETA--------PDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEG----KQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMR-EQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPM 202          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: BUDC_KLETE (Acetoin(diacetyl) reductase OS=Klebsiella terrigena GN=budC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 59/203 (29.06%), Postives = 89/203 (43.84%), Query Frame = 2
Query:   86 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFH---EDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFT----RSLTPYKSKGIRINVLCPEFVETEL 673
            A VTG   GIG+A++L L   G  V + D ++     VAA + +   +         A+ I+ DV+      AA E+     GG ++ +N+AGI+   P     E+  D         ++N+  VI   Q A+   +     G I+N  S AG        +YS+SK  V   T    R L P    GI +N  CP  V+T +
Sbjct:    5 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATATAVAAEINQAGGR---------AVAIKVDVSRRDQVFAAVEQARKALGGFNVIVNNAGIAPSTPIESITEEIVDR------VYNINVKGVIWGMQAAVEAFKKEGHGGKIVNACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPL---GITVNGFCPGIVKTPM 189          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: BPHB_COMTE (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Comamonas testosteroni GN=bphB PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 57/203 (28.08%), Postives = 98/203 (48.28%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGI----SNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLTPYKSKGIRINVLCPEFVETEL 673
            G  A +TGGASG+GRAL      +G  V V+D S E+ +E+           H      +A+ +  DV + +D   A E+ +A +G +D  I +AGI    +      ED+ D   ++     VN+   I   +  +  + +++  G ++   S+AG YP    P+Y+A+K  VV   R +    +  +R+N + P  + T+L
Sbjct:    5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVA--------HGG----NAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDA--AFDDIFHVNVKGYIHAVKACLPALVSSR--GSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDL 191          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: Y4EK_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4eK OS=Rhizobium sp. (strain NGR234) GN=NGR_a03840 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 63/201 (31.34%), Postives = 94/201 (46.77%), Query Frame = 2
Query:   86 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGI----SNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETEL 673
            A VTG +SGIG+A++L LA  G+ V  +      G++ AAL E      HS  G    +F   DV+      A  EK       +D+ +N+AG+    ++ +   ED  D        +D+N+ +V   T+  +  M   ++ G I   GSS GL P     +Y A+K  V LF+ +L        IR+  L P  VET L
Sbjct:   10 ALVTGASSGIGKAIALELASAGLRVLAL------GRDRAALDE-----LHSTAGIVPVVFDLSDVSEVYGKIAG-EK-------IDVLVNNAGLLTASASLVDLSEDDIDA------MIDINIRSVFKLTRHVLKQM-IERRRGHIFFTGSSGGLAPHPNSSVYGATKAAVSLFSSALRCDLIGLPIRVTELFPGRVETNL 184          
The following BLAST results are available for this feature:
BLAST of CN181640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
HCD2_MOUSE3.870e-1128.913-hydroxyacyl-CoA dehydrogenase type-2 OS=Mus musc... [more]
BDHA_RALEH3.870e-1129.06D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia ... [more]
DHSO_RHOSH5.054e-1127.64Sorbitol dehydrogenase OS=Rhodobacter sphaeroides ... [more]
ACT3_STRCO5.054e-1129.85Putative ketoacyl reductase OS=Streptomyces coelic... [more]
Y4MP_RHISN6.601e-1127.54Uncharacterized short-chain type dehydrogenase/red... [more]
LVR_LEIAQ6.601e-1129.65Levodione reductase OS=Leifsonia aquatica GN=lvr P... [more]
BUDC_KLETE6.601e-1129.06Acetoin(diacetyl) reductase OS=Klebsiella terrigen... [more]
BPHB_COMTE6.601e-1128.08Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
Y4EK_RHISN8.621e-1131.34Uncharacterized short-chain type dehydrogenase/red... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181640 ID=CN181640; Name=CN181640; organism=Citrus sinensis; type=EST; length=714bp
GAGGAAAACTCTTAACCGAGTAGTTTAATCGCTTCCCTTTGCCTCTCTGT
TTGTTCATAAAATGGAGCTCAAACCGGGCTTATCAGCTTTTGTCACCGGC
GGTGCATCTGGGATTGGTAGAGCTTTGAGCCTAGCTCTTGCAGGGAAGGG
AGTCTTTGTGACAGTTGTTGATCTCTCTGAAGAAAAGGGAAAGGAAGTTG
CAGCGCTTGTTGAAAAAGAGAATGCCAAGTTTCATTCAAACTTAGGATTT
CCATCTGCTATGTTTATAAGATGTGATGTGACCAACACAAGGGATACAGC
TGCTGCTTTTGAGAAGCACGTAGCTACATATGGAGGATTGGATATATGTA
TCAACAGTGCTGGCATAAGTAATCCCATTCCATTCCACGAGGATCAAACT
GATGGCACACGTTCATGGAGATTCACTCTTGATGTGAACTTGGTTGCAGT
TATTGATTGCACTCAGAAAGCGATTGGAATTATGCAAGCTGCAAAAAAGC
CTGGAGTGATTATAAATATGGGATCTTCTGCAGGACTTTATCCATTTTAC
ACAGATCCAATCTACTCTGCTTCCAAAGGTGGTGTTGTTTTATTTACTAG
ATCACTTACTCCCTACAAAAGCAAGGGAATTCGCATCAACGTGCTTTGCC
CTGAGTTTGTTGAAACTGAGTTGGCCTTAAAGGCGGGCTCCCCAATAATT
GATCTGATGGGGGG
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