CN181640

Overview
NameCN181640
Unique NameCN181640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6950 contig Csv1_Contig6950:149..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: DHB12_XENTR (Estradiol 17-beta-dehydrogenase 12 OS=Xenopus tropicalis GN=hsd17b12 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 62/211 (29.38%), Postives = 103/211 (48.82%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLD---------ICINSAGISNPIP-FHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETELA 676
            G  A VTG   GIG+A +  LA +G+ + ++  S EK +EVA  + KE  K                   T+  AA F K    YG ++         + +N+ G+S   P +  +  D   +    +++N+ +V   T+  +  M   +  GVI+N+ S++G+YP     +YSA+K  V  F+R L   Y+SKG+ +  + P +V T+LA
Sbjct:   56 GKWAVVTGATDGIGKAYAEELAKRGMNIVLISRSPEKLEEVAKQI-KEKFK-----------------VETKIIAADFGKPTEIYGRIESGLRDLEIGVLVNNVGVSYEHPEYFLEIPDLENTLDKMININITSVCQMTRLVLPGM-LGRGRGVILNISSASGMYPVPLLTVYSATKAFVDFFSRGLQAEYRSKGVTVQSVLPFYVATKLA 247          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: DHB12_MACFA (Estradiol 17-beta-dehydrogenase 12 OS=Macaca fascicularis GN=HSD17B12 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 68/217 (31.34%), Postives = 114/217 (52.53%), Query Frame = 2
Query:   74 PGLS--AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLD--ICINSAGISNPIP-FHEDQTDGTRSWRFTLDVNLVAVIDCTQKAI-GIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETELALKAGSPIID 703
            PGL   A VTGG  GIG++ +  LA +G+ V ++  S++K  +V++ + KE  K  +         I  D T        ++K      GL+  I +N+ G+S   P +  D  D     +  +++N+++V   TQ  + G+++ +K  G I+N+ S +G++P     IYSA+K  V  F++ L   Y+SKGI +  + P FV T+LA K   P +D
Sbjct:   47 PGLGEWAVVTGGTDGIGKSYAEELAKRGMKVVLISRSQDKLDQVSSEI-KEKFKVETRT-------IAVDFT----LEDIYDKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSK--GAILNISSGSGMFPVPLLTIYSATKTFVDFFSQCLHEEYRSKGIFVQSVLPYFVATKLA-KIRKPTLD 248          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: CBR4_HUMAN (Carbonyl reductase family member 4 OS=Homo sapiens GN=CBR4 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 62/195 (31.79%), Postives = 94/195 (48.21%), Query Frame = 2
Query:   92 VTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLT-PYKSKGIRINVLCPEFVETEL 673
            V GG+ GIGRA++  +A KG  + V+  + E  K  A  +  ++  F             CDV    D    FE+     G ++  +N+AGI+        +T+   S    L  NL+  +  T KA       ++ G I+N+GS  GL       +YSASKGG+V F+R+L      K IR+NV+ P FV T++
Sbjct:    7 VFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAGDLGGDHLAFS------------CDVAKEHDVQNTFEELEKHLGRVNFLVNAAGINRDGLLVRTKTEDMVS---QLHTNLLGSM-LTCKAAMRTMIQQQGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDM 185          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: DHB12_RAT (Estradiol 17-beta-dehydrogenase 12 OS=Rattus norvegicus GN=Hsd17b12 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 62/211 (29.38%), Postives = 115/211 (54.50%), Query Frame = 2
Query:   86 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDI--CINSAGISNPIP-FHEDQTDGTRSWRFTLDVNLVAVIDCTQKAI-GIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETELALKAGSPIID 703
            A VTGG  GIG++ +  LA +G+ + ++  S++K KEV+  +++   KF+      +  F   D+         ++K      GL+I   +N+ G+S   P +  +  D   + +  +++N++++   T+  + G+++ +K  GVI+N+ S++G+ P     +YSA+K  V  F++ L   YKSKGI +  + P FV T+LA K   P +D
Sbjct:   53 AVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLKEVSNNIKE---KFNVETRTIAVDFSLDDI---------YDKIKTGLSGLEIGVLVNNVGMSYEYPEYFLEIPDLDNTIKKLININVLSICKVTRLVLPGMVERSK--GVILNISSASGMLPVPLLTVYSATKAFVDFFSQCLHEEYKSKGIFVQSVLPFFVATKLA-KIRKPTLD 248          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: DHB12_BOVIN (Estradiol 17-beta-dehydrogenase 12 OS=Bos taurus GN=HSD17B12 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 63/214 (29.44%), Postives = 114/214 (53.27%), Query Frame = 2
Query:   56 HKMELKPGLS--AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDI--CINSAGISNPIP-FHEDQTDGTRSWRFTLDVNLVAVIDCTQKAI-GIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETELA 676
            H+  + P L   A VTGG  GIG++ +  LA +G+ + ++  S++K  +V++ + +   KF       +  F   D+         ++K  A+  GL+I   +N+ G+S   P +  D  D   + +  + VN ++V   T+  + G+++ +K  G I+N+ S++G+YP     IYSA+K  V  F++ L   YKSKG+ +  + P +V T+LA
Sbjct:   41 HEAGVGPWLGEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISE---KFKVETKTIAVDFTSEDI---------YDKIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSK--GAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLA 240          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: Y2478_STAAM (Uncharacterized oxidoreductase SAV2478 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2478 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 58/197 (29.44%), Postives = 93/197 (47.21%), Query Frame = 2
Query:   86 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLTPYKSK-GIRINVLCPEFVETEL 673
            A VTG  SGIG A++  L  +G  V +   +++K + VA  + +++ K            +  DVTN  +     +    T+GGLDI INSAG        + Q D    W   +DVN+   +   Q A+  M   +  G +IN+ S +G     +  IYSA+K  V   T+ L    +K G+++  + P  V+T +
Sbjct:    9 AVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKV-----------VPTDVTNKEEVDELMKIAQQTFGGLDIVINSAGQMLSSKITDYQVD---EWDSMIDVNIKGTLYTAQAALPTM-LEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAI 190          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: Y2266_STAAN (Uncharacterized oxidoreductase SA2266 OS=Staphylococcus aureus (strain N315) GN=SA2266 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 58/197 (29.44%), Postives = 93/197 (47.21%), Query Frame = 2
Query:   86 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLTPYKSK-GIRINVLCPEFVETEL 673
            A VTG  SGIG A++  L  +G  V +   +++K + VA  + +++ K            +  DVTN  +     +    T+GGLDI INSAG        + Q D    W   +DVN+   +   Q A+  M   +  G +IN+ S +G     +  IYSA+K  V   T+ L    +K G+++  + P  V+T +
Sbjct:    9 AVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKV-----------VPTDVTNKEEVDELMKIAQQTFGGLDIVINSAGQMLSSKITDYQVD---EWDSMIDVNIKGTLYTAQAALPTM-LEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAI 190          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: CBR4_XENLA (Carbonyl reductase family member 4 OS=Xenopus laevis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 60/196 (30.61%), Postives = 99/196 (50.51%), Query Frame = 2
Query:   92 VTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAI-GIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLTPYKSK-GIRINVLCPEFVETEL 673
            V GG+ GIG+A++  LA K   V V+  + E  +  AA+ E             + + + CDV+   +    F++     G +D  +NSAGIS        +++   S    L +NLV  I   + A+ G++Q  ++ G I+N+GS  G        IY ASK G++ F++SL    +K  IR+NV+ P F+ T++
Sbjct:    7 VFGGSRGIGKAVAKLLAQKDYKVAVISRNLEVAQ--AAVTE-----------IGAHLALSCDVSKENEIQCTFKEIKNNLGNIDYLVNSAGISRDALLLRTRSEDIMS---LLSINLVGTIQTCKVALKGMIQ--QQGGSIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIRTDM 184          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: CBR4_DANRE (Carbonyl reductase family member 4 OS=Danio rerio GN=cbr4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 60/197 (30.46%), Postives = 97/197 (49.24%), Query Frame = 2
Query:   86 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLT-PYKSKGIRINVLCPEFVETEL 673
            A V GG+ GIGRA S  LA +G  + ++  ++E  +  A  +  EN     +LG      + CDV+   +   AFE    T G +   +N+AGI+        +++   S    L  NL+  +   + A+  M +    G I+N+GS  G+       +YSASK G+  FTRSL     S+ IR+N++ P  + T++
Sbjct:    5 AVVFGGSRGIGRAASKLLAQRGHRIVLLSRNKEAAQSTAQSLPGEN-----HLG------LSCDVSKEEEVQKAFETINKTCGTVGFLVNAAGINRDALLLRSKSEDMLS---VLHTNLLGSMLTCKAAVRNMLS--HGGAIVNIGSVVGVKGNAGQCVYSASKAGLEGFTRSLAKEVASRNIRVNLVAPGLIHTDM 185          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: CBR4_RAT (Carbonyl reductase family member 4 OS=Rattus norvegicus GN=Cbr4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 58/195 (29.74%), Postives = 95/195 (48.72%), Query Frame = 2
Query:   92 VTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLT-PYKSKGIRINVLCPEFVETEL 673
            V GG+ GIG+A++  +A KG  + +V     +  EVA     E    H        +  RC++    D  + FE+     G ++  +N+AGI+        +T+   S    L  NL+  +   + A+  M   ++ G I+N+GS  GL        YSA+KGG++ F+RSL      K IR+NV+ P F+ T++
Sbjct:    7 VFGGSRGIGKAVAQLMAQKGYRLAIV----ARNLEVAKATASELGGIH--------LAFRCNIAKEGDVHSTFEEMEKHLGPVNFLVNAAGINRDSLLVRTKTEDMLS---QLHTNLLGTMLTCRAAMRTM--IQQGGSIVNVGSIIGLKGNVGQAAYSATKGGLIGFSRSLAKEVARKKIRVNVVAPGFIHTDM 184          
The following BLAST results are available for this feature:
BLAST of CN181640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
DHB12_XENTR1.088e-1329.38Estradiol 17-beta-dehydrogenase 12 OS=Xenopus trop... [more]
DHB12_MACFA1.088e-1331.34Estradiol 17-beta-dehydrogenase 12 OS=Macaca fasci... [more]
CBR4_HUMAN1.088e-1331.79Carbonyl reductase family member 4 OS=Homo sapiens... [more]
DHB12_RAT1.421e-1329.38Estradiol 17-beta-dehydrogenase 12 OS=Rattus norve... [more]
DHB12_BOVIN1.421e-1329.44Estradiol 17-beta-dehydrogenase 12 OS=Bos taurus G... [more]
Y2478_STAAM1.856e-1329.44Uncharacterized oxidoreductase SAV2478 OS=Staphylo... [more]
Y2266_STAAN1.856e-1329.44Uncharacterized oxidoreductase SA2266 OS=Staphyloc... [more]
CBR4_XENLA1.856e-1330.61Carbonyl reductase family member 4 OS=Xenopus laev... [more]
CBR4_DANRE1.856e-1330.46Carbonyl reductase family member 4 OS=Danio rerio ... [more]
CBR4_RAT2.424e-1329.74Carbonyl reductase family member 4 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181640 ID=CN181640; Name=CN181640; organism=Citrus sinensis; type=EST; length=714bp
GAGGAAAACTCTTAACCGAGTAGTTTAATCGCTTCCCTTTGCCTCTCTGT
TTGTTCATAAAATGGAGCTCAAACCGGGCTTATCAGCTTTTGTCACCGGC
GGTGCATCTGGGATTGGTAGAGCTTTGAGCCTAGCTCTTGCAGGGAAGGG
AGTCTTTGTGACAGTTGTTGATCTCTCTGAAGAAAAGGGAAAGGAAGTTG
CAGCGCTTGTTGAAAAAGAGAATGCCAAGTTTCATTCAAACTTAGGATTT
CCATCTGCTATGTTTATAAGATGTGATGTGACCAACACAAGGGATACAGC
TGCTGCTTTTGAGAAGCACGTAGCTACATATGGAGGATTGGATATATGTA
TCAACAGTGCTGGCATAAGTAATCCCATTCCATTCCACGAGGATCAAACT
GATGGCACACGTTCATGGAGATTCACTCTTGATGTGAACTTGGTTGCAGT
TATTGATTGCACTCAGAAAGCGATTGGAATTATGCAAGCTGCAAAAAAGC
CTGGAGTGATTATAAATATGGGATCTTCTGCAGGACTTTATCCATTTTAC
ACAGATCCAATCTACTCTGCTTCCAAAGGTGGTGTTGTTTTATTTACTAG
ATCACTTACTCCCTACAAAAGCAAGGGAATTCGCATCAACGTGCTTTGCC
CTGAGTTTGTTGAAACTGAGTTGGCCTTAAAGGCGGGCTCCCCAATAATT
GATCTGATGGGGGG
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