CN181632

Overview
NameCN181632
Unique NameCN181632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:1170..1922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.106e-38
Identity = 81/164 (49.39%), Postives = 111/164 (67.68%), Query Frame = -2
Query:  258 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 749
            D  P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ +  C+LA+  L++  +S TVADARF KPLD +L+RQLA  HE+LITVEEGSVGGFGS V  +L+  G+LD  LK+RS+V+PD +++   P      +GL    I +TV   L R
Sbjct:  469 DAGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLASEDLEAAGLSTTVADARFAKPLDHELLRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALRR 630          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.106e-38
Identity = 79/162 (48.77%), Postives = 111/162 (68.52%), Query Frame = -2
Query:  264 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 749
            D  P  FR+PRGNG+G  LP   +   LEIGKGRI+ +G +VA+L  G+ + + + AA+ L ++ +S TVAD RF KPLD  LIRQL   H++++TVEEGS+GG G+HV    +  G++DG LK+R+M LPD + DH +P  Q +E+GL++ HI  TVL  L
Sbjct:  469 DSGPIAFRYPRGNGVGVPLPEVPER--LEIGKGRIIRQGSKVALLSLGTRLAEALKAADQLDARGLSTTVADLRFAKPLDVALIRQLMTTHDVIVTVEEGSIGGLGAHVLTMASDEGLVDGGLKIRTMRLPDLFQDHDAPEKQYDEAGLNAPHIVDTVLKAL 628          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 83/162 (51.23%), Postives = 104/162 (64.20%), Query Frame = -2
Query:  264 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 749
            D  P  FRFPRG G+G   P   KG  L IGKGR++ EG  +A L  G+ +  C+  A  L S  IS TVADARF KP+D +LI  LA  H  L+ VEEGSVGGFGS V  FL+  G++DG LK+R++ LPD YIDH +PA QL E+GL +  I    L+L+
Sbjct:  468 DAGPIAFRFPRGEGVGVERP--EKGERLPIGKGRVVREGQDIAFLSLGTRLAACLDVAERLSSLGISATVADARFAKPIDRELIAHLARTHAALVVVEEGSVGGFGSQVLQFLSDEGLMDGGLKVRALTLPDTYIDHDTPAAQLAEAGLDADGIYKRALALV 627          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.148e-38
Identity = 81/171 (47.37%), Postives = 114/171 (66.67%), Query Frame = -2
Query:  237 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 749
            D  P   R+PRG G G  +P   +G  LEIGKGR++ EG  VAIL +G+ + Q + AA ML+++ +S TVADARFC+PLDTDLI +L   H  LIT+E+G++GGFG+ V H+L  +G L+    +R+M LPD YIDHGSP +    +GL++  I  T L+   RP +++ I
Sbjct:  470 DSGPIALRYPRGEGRGVEMP--ERGEVLEIGKGRVMTEGTEVAILSFGAHLAQALKAAEMLEAEGVSTTVADARFCRPLDTDLIDRLIEGHAALITLEQGAMGGFGAMVLHYLARTGQLEKGRAIRTMTLPDCYIDHGSPEEMYAWAGLTANDIRDTALA-AARPSKSVRI 637          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.038e-37
Identity = 80/161 (49.69%), Postives = 106/161 (65.84%), Query Frame = -2
Query:  258 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 740
            P  FR+PRG G+G  +P   +G  LEIGKGRI+ +G +VA+L +G+ +   + AA  L +  +  TVADARF KPLD DLIRQLA+ HE+LIT+EEGSVGGFGS V  FL   G+LD  LK+R++V+PD +++   P      +GL    I  TV   LGR
Sbjct:  472 PISFRYPRGEGVGIEMP--ERGQILEIGKGRIVKQGSKVALLSFGTRLADSLAAAEDLDAAGLPTTVADARFAKPLDHDLIRQLASHHEVLITIEEGSVGGFGSQVMQFLASEGLLDNGLKIRTLVMPDIWVEQAKPEVMNAMAGLDRAGIVQTVFKALGR 630          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.540e-37
Identity = 75/162 (46.30%), Postives = 110/162 (67.90%), Query Frame = -2
Query:  264 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 749
            D  P   R+PRG G+G  +P + +  PL IGKGRI+ EG  VA+L  G+ +Q C+ A  +L ++ ++ TVADARF KP D +L+  LA  HE+LI VEEG++GGFG+HV  +LT  G+LDG LKLR++ +PDR+ +H +P  Q  ++G+ ++ I+  VL  L
Sbjct:  471 DSGPIALRYPRGEGVGVEIPEDPQ--PLAIGKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFGAHVATWLTNQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.321e-36
Identity = 80/164 (48.78%), Postives = 109/164 (66.46%), Query Frame = -2
Query:  261 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 752
            IDDRPS FR+PRG G+G  +P   +  PLEIGKGRI+ EG  VAI+ +G+ + + + AA++L ++ +S TV DARF KPLD DL+ +LA EHE +ITVEEGS+GGFG+ V   L   G LD  LK+R++ LPD + D   P     ++GL +  I    LS +G
Sbjct:  466 IDDRPSAFRYPRGEGLGLDMPAIAE--PLEIGKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.321e-36
Identity = 80/164 (48.78%), Postives = 109/164 (66.46%), Query Frame = -2
Query:  261 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 752
            IDDRPS FR+PRG G+G  +P   +  PLEIGKGRI+ EG  VAI+ +G+ + + + AA++L ++ +S TV DARF KPLD DL+ +LA EHE +ITVEEGS+GGFG+ V   L   G LD  LK+R++ LPD + D   P     ++GL +  I    LS +G
Sbjct:  466 IDDRPSAFRYPRGEGLGLDMPAIAE--PLEIGKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.843e-36
Identity = 75/162 (46.30%), Postives = 109/162 (67.28%), Query Frame = -2
Query:  264 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 749
            D  P  FR+PRG GIG  LP   +   LEIGKGRI+  G +VA+L  G+ +++   AA+ L+++ +S T+AD RF KPLDT+LI QL   HE+++T+EE S+GG G+HV  + +  G+ D  LK+R+M LPD +I+  +P  Q +E+GL++ HI  TVL  L
Sbjct:  469 DSGPIAFRYPRGGGIGIDLPETPE--KLEIGKGRIVKHGSKVALLSLGTRLEEAKRAADELEAKGLSTTIADMRFAKPLDTELIAQLMKNHEVVVTIEEASIGGLGAHVLTYASDEGLTDAGLKIRTMRLPDAFIEQDAPEKQYDEAGLTAPHIVDTVLKAL 628          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.562e-36
Identity = 84/170 (49.41%), Postives = 107/170 (62.94%), Query Frame = -2
Query:  261 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR-------VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 749
            D  P  FR+PRGNGIG  LP   KG  LEIGKGRI+ E  R       VAIL  G  + + + AA+ L +Q + VTVADARF KP+D  L+  LA +HE+ IT+EEG++GGF S V   L  +G+LD  +K R M LPDRYIDH +   Q E++GL++ HI  T    LG
Sbjct:  486 DAGPIAFRYPRGNGIGLDLP--EKGEVLEIGKGRIVREARRAPNARGGVAILSLGPRMHESLRAADQLAAQGVPVTVADARFAKPIDKALVEDLARQHEVFITIEEGAIGGFSSLVVQHLAETGLLD-KVKFRPMALPDRYIDHNTQDAQYEDAGLTAPHIVRTAADALG 652          
The following BLAST results are available for this feature:
BLAST of CN181632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 448
Match NameE-valueIdentityDescription
DXS_RHIEC4.106e-3849.391-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_NOVAD4.106e-3848.771-deoxy-D-xylulose-5-phosphate synthase OS=Novosph... [more]
DXS_AZOC55.363e-3851.231-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS_RHOCA9.148e-3847.371-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]
DXS_AGRRK2.038e-3749.691-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS1_RHORT4.540e-3746.301-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_CAUCR1.321e-3648.781-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN1.321e-3648.781-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_ERYLH3.843e-3646.301-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_GLUOX8.562e-3649.411-deoxy-D-xylulose-5-phosphate synthase OS=Glucono... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001D24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181632 ID=CN181632; Name=CN181632; organism=Citrus sinensis; type=EST; length=753bp
TTATCTACGTGAAGATAATGCCTTGTATCTTTATTACAAGAAAAAATTGT
GAATGTACAGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACG
GTAATGCTTCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTG
GACCTTATAGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGA
AGGGCAAGATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTT
CTTTTGGCCTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAG
GAGAGCCCTGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTA
TCTATCAGGAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGC
CACTTAAGGTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAA
CCCTCTTCCACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAAT
GAGGTCTGTATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGG
AAATGTCTTGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACT
ACAGAACCATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCT
TCCCTTCCCAATCTCAAGTGGAGTTCCTTTGTTATTAGGTGGGAGAACTG
CTCCAATTCCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCT
ATA
back to top