CN181632

Overview
NameCN181632
Unique NameCN181632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:1170..1922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 68/160 (42.50%), Postives = 94/160 (58.75%), Query Frame = -2
Query:  276 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 752
            + D P+  R+PRG G G    P    T L +G+G +  +G  +AIL +GS+V   + AA+ L +     +VAD RF KPLDT LIRQLA  HE+L+TVEE  V GG GS V   L  +GI    + + ++ LPD Y++HG PA  L + GL +  I  +V
Sbjct:  462 LHDGPTAVRYPRGTGPGC--EPVAAMTALPLGQGTLRRQGKGIAILAFGSMVHPALAAADQLDA-----SVADMRFVKPLDTALIRQLAASHELLVTVEENVVMGGTGSAVLETLAAAGI---TVPVLNLGLPDHYVEHGDPALLLADCGLDTAGIVRSV 611          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_PSEPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=dxs PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 68/162 (41.98%), Postives = 95/162 (58.64%), Query Frame = -2
Query:  258 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 740
            P+  R+PRG G  A  P +    PLEIGKG +  +G++VA+L +G  VQ   LA  M  ++ I+ TV D RF KPLD  L+ +LA  HE+L+T+EE ++ GG G+ V  FL    +L   L L    LPD Y++H  PA  L E GL +  I A+V + + R
Sbjct:  477 PAAVRYPRGTGPNA--PISGDLQPLEIGKGVVRRQGEKVALLVFG--VQ---LAEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAR 628          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 67/156 (42.95%), Postives = 91/156 (58.33%), Query Frame = -2
Query:  276 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 740
            P+  R+PRGNG  AV+  + +  P+EIGKG +  +G + A L +G  VQ   LA  +  ++ I  TV D RF KPLD  L+R++A  HE+L+TVEE ++ GG G+ V  FL    IL   L L    LPD Y++H  PA  L E GL    I A+V
Sbjct:  478 PAAVRYPRGNGPNAVIEKDLE--PIEIGKGIVRRQGSKTAFLVFG--VQ---LAEALKVAEKIDATVVDMRFVKPLDEALVREIAGGHELLVTVEENAIMGGAGAAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEAGIEASV 623          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_PSEA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 67/164 (40.85%), Postives = 96/164 (58.54%), Query Frame = -2
Query:  258 DRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 746
            D P+  R+PRG+G    + P+ +  P+EIGKG +   G +VA+L +G  VQ   LA  M  ++ +  TVAD RF KPLD  L+R+LA  HE+L+++EE +V GG GS V  FL   G+    + L  + LPD Y++H  P++ L E GL +  I   V   L R
Sbjct:  473 DGPAAVRYPRGSGPNHPIDPDLQ--PVEIGKGVVRRRGGKVALLVFG--VQ---LAEAMKVAEGLDATVADMRFVKPLDEALVRELAGSHELLVSIEENAVMGGAGSAVGEFLAREGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_PROM4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 65/164 (39.63%), Postives = 91/164 (55.49%), Query Frame = -2
Query:  261 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 749
            +D P   R PRG+G G  L       PL+IG+G IL +GD + IL YGS+V   V  A +LK   IS TV +ARF +PLD  LI  LA     ++T+EEG++ GGFGS V    +   +L    +L    +PD+ +DH SP    E  GL+   +S +++   G
Sbjct:  467 NDGPCALRIPRGSGEGVTLMEEG-WEPLKIGRGEILEDGDDLLILAYGSMVTPAVQTAELLKQAGISSTVVNARFLRPLDQALIHPLARRIGKVVTIEEGALGGGFGSAVVESFSDQDLLVPTFRLG---IPDKLVDHASPQQSKESLGLTPSQMSKSIMKRYG 626          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.731e-23
Identity = 70/164 (42.68%), Postives = 96/164 (58.54%), Query Frame = -2
Query:  261 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 740
            P+  R+PRG G  AV+  N    P+EIGKG +  +G  VAIL +G  VQ   LA  ++ ++ +  TV D RF KPLD  L+R+ A  HE+L+T+EE +V GG G+ V  FL  + IL   L L    LPD Y++H  PA  L E GL +  I A +   L+L+G
Sbjct:  478 PAAVRYPRGTGPNAVIEANLD--PVEIGKGVVRRQGQGVAILVFG--VQ---LAEALVVAEKLDATVIDMRFVKPLDEALVRETAASHELLVTLEENAVMGGAGAAVSEFLARANILKSVLHLG---LPDVYVEHAKPAQMLAECGLDAEGIEAAINERLALIG 631          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.731e-23
Identity = 66/165 (40.00%), Postives = 94/165 (56.97%), Query Frame = -2
Query:  255 DRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 746
            D P   R+PRGNG G  L       PL IGK  +L +GD + +L YGS+V   + AA +L+   I+ TV +ARF KPLDT+LI  LA +   ++TVEEG  +GGFGS V   L    IL   + +  + +PD  ++H +P     + GL+S  I+  VL+   +P
Sbjct:  467 DGPIGLRYPRGNGYGVALMEEG-WEPLPIGKAEVLRQGDDLLMLAYGSMVYPTLQAAEILREHGIAATVVNARFAKPLDTELILPLAEKLGRVVTVEEGCLIGGFGSAVLEALQDQEIL---VPVTRIGIPDILVEHATPDQSKAQLGLTSAQIAERVLAKTQQP 627          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS2_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.731e-23
Identity = 68/169 (40.24%), Postives = 96/169 (56.80%), Query Frame = -2
Query:  240 RPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALL 743
            RP   R+PRG G G  LP +     LEIG+G +L EGD VAI+  GS V     AA +L+++ I  TV +ARF KPLD +LI   A     ++TVEE ++ GGFGS V   L   G+ D  ++ + + +PDR+I+ G      ++ GL    I+ATV + L    +A L
Sbjct:  467 RPVALRYPRGAGYG--LPLDQTIQSLEIGRGELLTEGDDVAIVAIGSTVYPAQEAAKLLEARGIRATVVNARFVKPLDRELILGAARRTGCIVTVEENALQGGFGSAVLELLADEGMTD--VRAKRIGIPDRFIEQGPQPQLRKDLGLDGAGIAATVEAFLTAKGQAAL 631          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_PSEU5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.873e-23
Identity = 67/165 (40.61%), Postives = 94/165 (56.97%), Query Frame = -2
Query:  258 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGR 740
            P+  R+PRG+G  A + P  +  PLEIGK  +   G +VA+L +G  + + +   + L +     TV D RF KPLD  L+R+LA  HE+L+TVEE S+ GG GS V  FL   G+L   L L    LPD Y++H  P++ L E GL +  I   V   L+ LG+
Sbjct:  477 PAAVRYPRGSGPNASIEPALE--PLEIGKAVVRRRGSKVALLVFGVQLPEALQVGDALDA-----TVVDMRFVKPLDEALLRELAGSHELLVTVEENSIMGGAGSAVAEFLAAEGVLRPILHLG---LPDYYVEHAKPSEMLAECGLDAAGIEVAVRKRLAALGK 631          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_VIBSL (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio splendidus (strain LGP32) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 65/168 (38.69%), Postives = 101/168 (60.12%), Query Frame = -2
Query:  258 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME------GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 740
            PS  R+PRGNG+G  +   ++ T LEIGKGRI+ E      G +VAIL +G+ ++  +  A+      I  TVAD RF KPLD  LI+QLA +H++L+T+EE ++ GG G+ V  FL    +L   + + ++ LPD++I  G+  +  EE GL ++ I  ++   L +
Sbjct:  470 PSAVRYPRGNGMGTEI--QSEFTALEIGKGRIVRESKKAKDGSKVAILSFGTFLESALQTADA-----IDATVADMRFVKPLDEALIKQLAADHDVLVTIEENAIAGGAGAGVIEFLMQEKLL---MPVLNLGLPDKFIAQGTQDELHEELGLDAKGIEKSISDYLAK 627          
The following BLAST results are available for this feature:
BLAST of CN181632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 448
Match NameE-valueIdentityDescription
DXS_LARHH2.187e-2342.501-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]
DXS_PSEPK2.857e-2341.981-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEFS2.857e-2342.951-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEA72.857e-2340.851-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PROM42.857e-2339.631-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_PSESM3.731e-2342.681-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_CYAP43.731e-2340.001-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS2_GEOMG3.731e-2340.241-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geoba... [more]
DXS_PSEU54.873e-2340.611-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_VIBSL6.364e-2338.691-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181632 ID=CN181632; Name=CN181632; organism=Citrus sinensis; type=EST; length=753bp
TTATCTACGTGAAGATAATGCCTTGTATCTTTATTACAAGAAAAAATTGT
GAATGTACAGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACG
GTAATGCTTCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTG
GACCTTATAGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGA
AGGGCAAGATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTT
CTTTTGGCCTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAG
GAGAGCCCTGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTA
TCTATCAGGAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGC
CACTTAAGGTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAA
CCCTCTTCCACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAAT
GAGGTCTGTATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGG
AAATGTCTTGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACT
ACAGAACCATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCT
TCCCTTCCCAATCTCAAGTGGAGTTCCTTTGTTATTAGGTGGGAGAACTG
CTCCAATTCCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCT
ATA
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