CN188652

Overview
NameCN188652
Unique NameCN188652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:9..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.269e-60
Identity = 108/162 (66.67%), Postives = 134/162 (82.72%), Query Frame = 3
Query:  204 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            A  Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+A
Sbjct:   29 AALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSA 190          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.269e-60
Identity = 108/162 (66.67%), Postives = 134/162 (82.72%), Query Frame = 3
Query:  204 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            A  Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+A
Sbjct:   29 AALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSA 190          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.512e-60
Identity = 108/159 (67.92%), Postives = 136/159 (85.53%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            Q+ VREAL  A+ EEM  D KVF+MGEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA+DHI+NSAAK++YMS GQ+  PIVFRGPNGAA+ V AQHSQ YAA Y+ +PGLKV++PYS+ED +GL+  A
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHYMSGGQVRCPIVFRGPNGAASRVAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITA 160          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.614e-59
Identity = 108/159 (67.92%), Postives = 133/159 (83.65%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            Q+ VREAL  A+ EEM  D KVF+MGEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA DHI+NSAAK++YMS GQ   PIVFRGPNGAA+ V AQHSQ Y A Y+ VPGLKV++PYS+ED +GL+  A
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQAKCPIVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTA 160          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.721e-59
Identity = 106/159 (66.67%), Postives = 134/159 (84.28%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            Q+ VREAL  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA DHI+NSAAK++YMS GQ+  PIVFRGPNGAA+ V AQHSQ Y A Y+ +PGLKV++PYS+ED +GL+  A
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTA 160          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 6.165e-59
Identity = 109/159 (68.55%), Postives = 133/159 (83.65%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            Q  +REAL  A+ EEM  D +VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPI+E GF+GIGVGAA  GL+PV+EFMT NFSMQAIDHIINSAAK++YMS GQ+  PIVFRGPNGAA  VGAQH+Q +  WYA+VPGL VL+PY + DA+GLLKAA
Sbjct:  138 QQTLREALRDAMAEEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRCPIVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAA 296          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.996e-58
Identity = 105/159 (66.04%), Postives = 133/159 (83.65%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            Q+ VREAL  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++G +RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA DHI+NSAAK++YMS GQ+  PIVFRGPNGAA+ V AQHSQ Y A Y+ +PGLKV++PYS+ED +GL+  A
Sbjct:    2 QITVREALRDAMQEEMLRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTA 160          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.996e-58
Identity = 105/159 (66.04%), Postives = 133/159 (83.65%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            Q+ VREAL  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++G +RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA DHI+NSAAK++YMS GQ+  PIVFRGPNGAA+ V AQHSQ Y A Y+ +PGLKV++PYS+ED +GL+  A
Sbjct:    2 QITVREALRDAMQEEMLRDEKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTA 160          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.088e-55
Identity = 105/169 (62.13%), Postives = 129/169 (76.33%), Query Frame = 3
Query:  183 NLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            ++R  +S    + VR+ALN+ALDEE+  D +VFL+GEEV +Y GAYKISKGL +KYG  R+ DTPITE    G+ VGAA  GL+P+ EFM+ NFSMQ IDHIINSAAK++YMS+G+  VPIVFRG NGAA GV  QHSQ + AW+   PG+KV+ PY  EDARGLLKAA
Sbjct:   23 SVRRLASGTLNVTVRDALNAALDEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNGLRPICEFMSMNFSMQGIDHIINSAAKAHYMSAGRFHVPIVFRGANGAAVGVAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAA 191          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 73/161 (45.34%), Postives = 111/161 (68.94%), Query Frame = 3
Query:  207 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            + + ++ EALN  + EE+  DPKVF++GE++G Y G+YK++KGL EKYG  R+LDTPI E  FTGI +GAA  GL+P++E M   F + A + I N+A   +Y S G  + P+V RGP G    +GA+HSQ   +++ SVPGL++++  +  +A+GL+K+A
Sbjct:    1 MSEKLLYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTTPLVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSA 161          
The following BLAST results are available for this feature:
BLAST of CN188652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_PONAB3.269e-6066.67Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN3.269e-6066.67Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICBR9.512e-6067.92Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE3.614e-5967.92Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN4.721e-5966.67Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYMMO6.165e-5968.55Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY3.996e-5866.04Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR3.996e-5866.04Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU1.088e-5562.13Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CHAVU1.579e-3845.34Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188652 ID=CN188652; Name=CN188652; organism=Citrus sinensis; type=EST; length=690bp
ATTGCTGTGCGTTGCAACTTTCAACCTATTTCCCTCTCCACGGCGATCGG
ATCGCTGATAACTTTCACTTCTGGTAATCTCGGATTTTCATTGAAACAGA
GTTGAAGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTT
CTCCTGTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCA
TCTGCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGA
TGAGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTG
GGGAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATAT
GGCCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGG
GATTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCA
TGACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCT
GCAAAATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCTATCGTCTT
CAGAGGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAAT
GTTATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCA
TACAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTA
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