CN188652

Overview
NameCN188652
Unique NameCN188652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:9..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.693e-38
Identity = 76/159 (47.80%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            ++++ EAL  ALDEEM  DP V +MGE+VG Y G+YK++KG  EKYG  R+LDTPI E  FTG+ +GAA  GL+P+VE M   F + A + I N+A   +Y S G   +PIV RGP G    +GA+HSQ   +++ SVPGL++++  +  + +GLLK+A
Sbjct:    3 EVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSA 161          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.999e-38
Identity = 78/159 (49.06%), Postives = 110/159 (69.18%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            ++ + EAL  A+DEEM+ D +VF++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  GLKPVVE M  +F + A + I N+A   +Y S G  S+P+V RGP G    + A+HSQ   A++ +VPGLK+++  +  +A+GLLKAA
Sbjct:    4 KLFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGMNLSFLLLAFNQISNNAGMLHYTSGGNWSIPLVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAA 162          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.835e-38
Identity = 75/161 (46.58%), Postives = 109/161 (67.70%), Query Frame = 3
Query:  207 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            + +M++ EAL   L EEM  DPKV +MGE+VG Y G+YK++KG  EKYG  R+LDTPI E  FTG+ +GAA  GL+PVVE M   F + A + I N+A   +Y S    ++PIV RGP G    +GA+HSQ   +++ SVPGL++++  +  +A+GL+K++
Sbjct:    1 MSEMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGANFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSS 161          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 74/159 (46.54%), Postives = 109/159 (68.55%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            ++++ EAL   L EEM  DP+V +MGE+VG Y G+YK++KG  E+YG  R+LDTPI E  FTG+ +GAA  GL+PVVE M   F + A + I N+A   +Y S G  ++PIV RGP G    +GA+HSQ   +++ SVPGL++++  +  +A+GL+K+A
Sbjct:    3 EVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSA 161          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 73/161 (45.34%), Postives = 110/161 (68.32%), Query Frame = 3
Query:  207 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            + ++ + +AL +A DEEM+ DP V ++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  GL+P+VE M  +F + A + I N+A    Y S G  ++P+V RGP G    +GA+HSQ   A++ ++PGLK+++  +  +A+GLLK+A
Sbjct:    1 MSKIFMFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSA 161          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 73/159 (45.91%), Postives = 106/159 (66.67%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            ++++ +AL  A DEEM  D  VF++GE+VG Y G+YK++K L  KYG  RVLDTPI E  F G+ +GAA  GL+P+VE M  +F + A + I N+A    Y S G   +PIV RGP G    +GA+HSQ   A++ ++PGLK+++  +  +A+GLLK+A
Sbjct:    3 EVLMFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFQIPIVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSA 161          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.134e-35
Identity = 71/161 (44.10%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  207 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            +  M + EAL +A+DEEM  D  VF++GE+VG Y G+YK++K L  KYG  RVLD PI E  FTG+ +GAA  GL+P+VE M   F + A + I N+ +   Y S G  ++P+V RGP G    + A+HSQ   + + S+PGL++++  ++ +A+GLLK+A
Sbjct:    1 MSMMFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQISNNLSMLQYTSGGNFNIPVVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSA 161          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.787e-35
Identity = 72/161 (44.72%), Postives = 108/161 (67.08%), Query Frame = 3
Query:  207 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            + ++ + +AL +A DEEM  D  V ++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  GL+P+VE M  +F + A + I N+A    Y S G  ++P+V RGP G    +GA+HSQ   A++ ++PGLK+++  +  +A+GLLK+A
Sbjct:    1 MSKVFMFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSA 161          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.359e-34
Identity = 70/154 (45.45%), Postives = 100/154 (64.94%), Query Frame = 3
Query:  228 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            +A+N A+ EEM  D +VF++GE+VG   G +K + GL E++G ERV+DTP+ E+   G+G+GAA YG++P+ E    +F M A++ II+ AAK  Y S+   S PIV R P G        HSQ   A +A+ PGLK++ P +  DA+GLLKAA
Sbjct:    8 DAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYGMRPIAEMQFADFIMPAVNQIISEAAKIRYRSNNDWSCPIVVRAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAA 161          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 69/158 (43.67%), Postives = 102/158 (64.56%), Query Frame = 3
Query:  216 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA   G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G     G  HSQ   A +    GLKV++  +  DA+GLLKAA
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAA 161          
The following BLAST results are available for this feature:
BLAST of CN188652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CHAGL2.693e-3847.80Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME5.999e-3849.06Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAPU7.835e-3846.58Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR1.023e-3746.54Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE1.478e-3645.34Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL1.930e-3645.91Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYACA2.134e-3544.10Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU2.787e-3544.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BACSU2.359e-3445.452-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODBB_THET81.171e-3343.672-oxoisovalerate dehydrogenase subunit beta OS=The... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188652 ID=CN188652; Name=CN188652; organism=Citrus sinensis; type=EST; length=690bp
ATTGCTGTGCGTTGCAACTTTCAACCTATTTCCCTCTCCACGGCGATCGG
ATCGCTGATAACTTTCACTTCTGGTAATCTCGGATTTTCATTGAAACAGA
GTTGAAGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTT
CTCCTGTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCA
TCTGCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGA
TGAGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTG
GGGAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATAT
GGCCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGG
GATTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCA
TGACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCT
GCAAAATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCTATCGTCTT
CAGAGGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAAT
GTTATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCA
TACAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTA
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