CN188652

Overview
NameCN188652
Unique NameCN188652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:9..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 65/154 (42.21%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  228 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            EALN+A+D  +  D  V L G++ G   G ++ +KGL +KYG ERV D PI E    GIGVGAA  GLKP+VE     FS  A+  I   AA+    S G  + P+V R P G        HS+   A YA + GLK + P +  D +GL  AA
Sbjct:   10 EALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAPLVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAA 163          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.824e-25
Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G  G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G        HS       A  PGLKV+ P +  DA+GLL +A
Sbjct:    3 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISA 161          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.775e-24
Identity = 55/156 (35.26%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  RGP G        H+       A  PGLKV+ P    DA+GLL
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRGPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLL 158          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.775e-24
Identity = 59/161 (36.65%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  210 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            ++M + +A+N+ +D  M  D K  + GE+VG + G ++ + GL +KYG  RV +TP+ E G  G  +G A  G  P+ E    ++   A D I+N AAK  Y S GQ     +  R P GA    G  HSQ   +++   PGLKV+ P +  +A+GLL A+
Sbjct:   47 QKMNLFQAINNGMDIAMQKDSKAVVFGEDVG-FGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSPYGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLAS 206          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLL 158          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLL 158          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLL 158          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLL 158          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLL 158          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLL 158          
The following BLAST results are available for this feature:
BLAST of CN188652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_MYCGE1.533e-2542.21Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST5.824e-2536.48Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC3.775e-2435.26Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_DICDI3.775e-2436.652-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_STAAW1.874e-2334.62Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU1.874e-2334.62Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS1.874e-2334.62Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR1.874e-2334.62Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN1.874e-2334.62Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM1.874e-2334.62Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188652 ID=CN188652; Name=CN188652; organism=Citrus sinensis; type=EST; length=690bp
ATTGCTGTGCGTTGCAACTTTCAACCTATTTCCCTCTCCACGGCGATCGG
ATCGCTGATAACTTTCACTTCTGGTAATCTCGGATTTTCATTGAAACAGA
GTTGAAGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTT
CTCCTGTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCA
TCTGCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGA
TGAGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTG
GGGAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATAT
GGCCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGG
GATTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCA
TGACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCT
GCAAAATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCTATCGTCTT
CAGAGGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAAT
GTTATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCA
TACAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTA
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