CN188652

Overview
NameCN188652
Unique NameCN188652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23
Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D +    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLL 158          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23
Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D +    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLL 158          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 53/159 (33.33%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  213 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAA 689
            QM + +A+  AL  E+  D  V + GE+VG   G ++ ++GL +++G +RV DTP+ E+G  G+ +G    G +PV+E   F F  + +D +    A+  Y S G+ + P+  R P G        H+       A  PG+KV+ P +  DA+GLL +A
Sbjct:    3 QMTMIQAITDALRTELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGIGGLALGLGLNGFRPVMEIQFFGFVYEVMDSVSGQMARMRYRSGGRWTSPVTIRSPFGGGVHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISA 161          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 56/158 (35.44%), Postives = 85/158 (53.80%), Query Frame = 3
Query:  210 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            ++M + +A+ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  R P G        HSQ   A++A  PG+KV+ P S   A+GLL
Sbjct:   69 QKMNLFQAVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLL 225          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 3
Query:  210 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  R P G        HSQ   A++A  PG+KV+ P S   A+GLL
Sbjct:   67 QKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLL 223          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 3
Query:  210 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  R P G        HSQ   A++A  PG+KV+ P S   A+GLL
Sbjct:   67 QKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLL 223          
BLAST of CN188652 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  189 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLL 680
            R Y    K M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  R P G        HSQ   A++A  PG+KV+ P S   A+GLL
Sbjct:   63 REYGQTQK-MNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLL 225          
The following BLAST results are available for this feature:
BLAST of CN188652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAES3.196e-2333.97Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ3.196e-2333.97Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACSU4.174e-2333.33Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BOVIN1.343e-2135.442-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT2.290e-2134.812-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE2.290e-2134.812-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN2.290e-2135.152-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188652 ID=CN188652; Name=CN188652; organism=Citrus sinensis; type=EST; length=690bp
ATTGCTGTGCGTTGCAACTTTCAACCTATTTCCCTCTCCACGGCGATCGG
ATCGCTGATAACTTTCACTTCTGGTAATCTCGGATTTTCATTGAAACAGA
GTTGAAGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTT
CTCCTGTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCA
TCTGCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGA
TGAGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTG
GGGAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATAT
GGCCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGG
GATTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCA
TGACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCT
GCAAAATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCTATCGTCTT
CAGAGGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAAT
GTTATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCA
TACAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTA
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