CN181629

Overview
NameCN181629
Unique NameCN181629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.103e-13
Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = -2
Query:  269 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 760
            D ++  E+FKPFG V SV +  + E G SRG G++   +  SA NA+  ++  ++ G+++ V  +     R    + L    +  K+  Y+  + L+V NL  ++  E L   F  FGT+ SARV+ D  G+ ++ FGF+ FSS  E   A++ +N    +G+ + V
Sbjct:  251 DNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVN-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 53/165 (32.12%), Postives = 86/165 (52.12%), Query Frame = -2
Query:  275 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 760
            D   L E+F  FG  LSV+V  + +TG SRG G++  G+   A+ A+  ++G +V GR +   R +  I+     +     I   ++I  Y+  + LYV NL   +  + LR  F  +GT+ SA+V+   +G  ++ FGF+ FSS  E   A+    T+  GR +
Sbjct:  203 DDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 52/156 (33.33%), Postives = 83/156 (53.21%), Query Frame = -2
Query:  299 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 754
            +E  ++ KPFG  +SV +SR+ E G+S+G G++   +  SA+ A+  L+  +V G+++    +       R AE   S  +K    E+      LYV NL      + LR  F  FGT+ S++V+ D  G  +R FGF+ +SS  E   A+S +NG
Sbjct:  241 AEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEMNG 392          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = -2
Query:  275 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 760
            D   L E+F  FG  LSV+V  + ++G SRG G++  G+   A+ A+  ++G +V GR +   R +  I+  S  +     I   ++I  Y+  + LYV NL   +  + LR  F  +GT+ SA+V+   +G  ++ FGF+ FSS  E   A+    T+  GR +
Sbjct:  203 DDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQ-ERINRYQGVN-LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = -2
Query:  269 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 760
            D   L E F  FG +LS +V+ + E G+SRG G++   + + A++AI A+DG  +  +E+ V   +    R    E +    K  F       +YV N+      E+    FG++G + SA +  D +G+  R FGF++F   A    A+  LN  +F+G+ + V
Sbjct:  138 DNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEV----KAKFT-----NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGK-LRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYV 291          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 53/173 (30.64%), Postives = 84/173 (48.55%), Query Frame = -2
Query:  245 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGVDRTE 760
            D   L E F  FGT+LS +V+ +  TG S+G G++      SA+ AI  L+G  +  +++ V   I    R R+       P   F       +YV NL   +  ++LR  FG+FG + SA V+ D+ G  +R FGF++F  ++A   A   +NG       + V     ++E
Sbjct:  148 DNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSE 309          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 51/167 (30.54%), Postives = 85/167 (50.90%), Query Frame = -2
Query:  266 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 760
            D   L E+F  FG  LSV+V  + E+G S+G G+++      A+ A+  ++G ++ G+++ V  +     R    +      K  +I  Y+  + LYV NL   +  E LR  F  FGT+ SA+V+   +G  ++ FGF+ FSS  E   A+    T+  GR +  +
Sbjct:  203 DDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 51/167 (30.54%), Postives = 85/167 (50.90%), Query Frame = -2
Query:  266 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 760
            D   L E+F  FG  LSV+V  + E+G S+G G+++      A+ A+  ++G ++ G+++ V  +     R    +      K  +I  Y+  + LYV NL   +  E LR  F  FGT+ SA+V+   +G  ++ FGF+ FSS  E   A+    T+  GR +  +
Sbjct:  203 DDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  251 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGVDR 496
            E  ++ +VG L+WA   EDL+  F +FG V+ +++++DR+   +R FGF++F  + A RDA   +NG +  GR I V E   R
Sbjct:    3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 51/165 (30.91%), Postives = 84/165 (50.91%), Query Frame = -2
Query:  275 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 760
            D   L E+F  FG  LSV+V  +  +G SRG G++  G+   A+ A+  ++G +V GR +   R +  I+     +     I   ++I  Y+  + LYV NL   +  + LR  F  +GT+ S +V+   +G  ++ FGF+ FSS  E   A+    T+  GR +
Sbjct:  203 DDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQ-ERINRYQGVN-LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358          
The following BLAST results are available for this feature:
BLAST of CN181629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PABP_PICGU6.103e-1331.74Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR3.029e-1232.12Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_CRYNE6.747e-1233.33Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABA_XENLA8.812e-1232.12Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP_ASHGO1.151e-1130.30Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_ARATH1.503e-1130.64Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP1_RAT2.564e-1130.54Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE2.564e-1130.54Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
GRP8_ARATH3.349e-1138.55Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
EPABB_XENLA3.349e-1130.91Embryonic polyadenylate-binding protein B OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181629 ID=CN181629; Name=CN181629; organism=Citrus sinensis; type=EST; length=761bp
CCAACTANTAACAAAATCAACCACTACCTGCAACACCTGCACCTCAGTAT
TTTTAACATAATGTTTACATATGAAAAAGCCTCAGGGACTTCCCAGACAC
AAGATCTTGAATTCTGGTGGGCATTCGTACCCGCTATCCTGCACCACCTT
TCAGCCAAGGAGGATACTCCAAGCTAAGCAATTTCTTGTTACTAAAAGAA
GTTTCTTCACTACAAACATGAACCGATCAAAACTGCAATCAAGACTCAGT
TCTGTCAACACCTTCTCTAACAATTATTGTCCGACCCCGAAAGTCTGTTC
CATTTAAAGAAAGTGCAGCATCACGTTCTGCGTCAGAAGAGAAGGAAATA
AACCCAAAAACTCGGGTGGTTTGTCCTTTACGATCGTGCAACACTCTAGC
ACTGACCACAGTCCCAAACCGGCCAAAATGATTTCTCAAATCCTCAGGTT
TTACAGCCCAGGAAAGATTGCCAACATATAATTTATGAGGGCTTTCATAG
ACAAAAATCTTCTTTGGTGGTGAAATCAATGCCTCAGCATTCCTAGTCCG
CGAATTCATATCAATTGAAAATCTCACCCGCATTTCACGTCCACCCACAT
CAGATCCGTCCAATGCAATAATTGCATTTTTTGCTGAATTGATCGAACCC
ATTGTCAGGTAACCGCATCCACGACTTATGCCTGTTTCGGGATTCCTCGA
AACCTCAACGGAAAGAACGGTTCCAAAAGGCTTGAACATCTCAAGAAGCT
CTGAAATGTCA
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