CN181629
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 6.103e-13 Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = -2 Query: 269 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 760 D ++ E+FKPFG V SV + + E G SRG G++ + SA NA+ ++ ++ G+++ V + R + L + K+ Y+ + L+V NL ++ E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++ +N +G+ + V Sbjct: 251 DNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVN-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.029e-12 Identity = 53/165 (32.12%), Postives = 86/165 (52.12%), Query Frame = -2 Query: 275 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 760 D L E+F FG LSV+V + +TG SRG G++ G+ A+ A+ ++G +V GR + R + I+ + I ++I Y+ + LYV NL + + LR F +GT+ SA+V+ +G ++ FGF+ FSS E A+ T+ GR + Sbjct: 203 DDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12 Identity = 52/156 (33.33%), Postives = 83/156 (53.21%), Query Frame = -2 Query: 299 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 754 +E ++ KPFG +SV +SR+ E G+S+G G++ + SA+ A+ L+ +V G+++ + R AE S +K E+ LYV NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +NG Sbjct: 241 AEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEMNG 392
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12 Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = -2 Query: 275 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 760 D L E+F FG LSV+V + ++G SRG G++ G+ A+ A+ ++G +V GR + R + I+ S + I ++I Y+ + LYV NL + + LR F +GT+ SA+V+ +G ++ FGF+ FSS E A+ T+ GR + Sbjct: 203 DDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQ-ERINRYQGVN-LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11 Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = -2 Query: 269 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 760 D L E F FG +LS +V+ + E G+SRG G++ + + A++AI A+DG + +E+ V + R E + K F +YV N+ E+ FG++G + SA + D +G+ R FGF++F A A+ LN +F+G+ + V Sbjct: 138 DNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEV----KAKFT-----NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGK-LRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYV 291
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11 Identity = 53/173 (30.64%), Postives = 84/173 (48.55%), Query Frame = -2 Query: 245 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGVDRTE 760 D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L+G + +++ V I R R+ P F +YV NL + ++LR FG+FG + SA V+ D+ G +R FGF++F ++A A +NG + V ++E Sbjct: 148 DNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSE 309
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11 Identity = 51/167 (30.54%), Postives = 85/167 (50.90%), Query Frame = -2 Query: 266 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 760 D L E+F FG LSV+V + E+G S+G G+++ A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL + E LR F FGT+ SA+V+ +G ++ FGF+ FSS E A+ T+ GR + + Sbjct: 203 DDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11 Identity = 51/167 (30.54%), Postives = 85/167 (50.90%), Query Frame = -2 Query: 266 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 760 D L E+F FG LSV+V + E+G S+G G+++ A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL + E LR F FGT+ SA+V+ +G ++ FGF+ FSS E A+ T+ GR + + Sbjct: 203 DDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11 Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = -2 Query: 251 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGVDR 496 E ++ +VG L+WA EDL+ F +FG V+ +++++DR+ +R FGF++F + A RDA +NG + GR I V E R Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11 Identity = 51/165 (30.91%), Postives = 84/165 (50.91%), Query Frame = -2 Query: 275 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 760 D L E+F FG LSV+V + +G SRG G++ G+ A+ A+ ++G +V GR + R + I+ + I ++I Y+ + LYV NL + + LR F +GT+ S +V+ +G ++ FGF+ FSS E A+ T+ GR + Sbjct: 203 DDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQ-ERINRYQGVN-LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358 The following BLAST results are available for this feature:
BLAST of CN181629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181629 ID=CN181629; Name=CN181629; organism=Citrus sinensis; type=EST; length=761bpback to top |