CN181617

Overview
NameCN181617
Unique NameCN181617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.442e-46
Identity = 93/148 (62.84%), Postives = 116/148 (78.38%), Query Frame = -3
Query:  210 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 653
            NKM+I+E KR++HDALCV RNL+R++ IVYGGG+AE+A +I V   ADR  G+EQYA RAFADAL++IPMALAENSGL PI+ LS +K +QI     + GID    GTNDM+EQ V ETL+ K++QI LATQVV+MILKIDDV  P +
Sbjct:  390 NKMIIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAFADALESIPMALAENSGLAPIDALSDLKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDVRVPDD 537          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 8.686e-44
Identity = 83/144 (57.64%), Postives = 113/144 (78.47%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            NKM+++E +R++HD+LCV RNL++++ +VYGGGAAE+  S+AV   AD+  G++QYA R FA ALD IPM LAENSGL PI TLS +K++Q++E   N G+DC   G+NDM+E  V +  IGK+QQILLATQ+ +MILKID+VI
Sbjct:  412 NKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.301e-31
Identity = 68/145 (46.90%), Postives = 97/145 (66.90%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            N ++IEE KRSI DALC  RN++ N+ IVYGGG++E++CS+A++  A  Y G E+ AI  F  AL+ IP+ LA NSG  PI   S ++  Q+   N + G+DC   G  DM++  VF+ L  K +Q  +ATQ+V M+LKID+V+S
Sbjct:  384 NDLVIEEAKRSIRDALCAVRNILTNSRIVYGGGSSEMSCSLALERIATGYSGEEREAILGFGRALEEIPLCLARNSGHDPIGYSSDLRKLQMESKNFHLGVDCLGDGEQDMKKLGVFDALSSKIRQFQMATQLVTMVLKIDNVVS 528          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.539e-27
Identity = 61/145 (42.07%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y IRAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  397 NKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTTGINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVVN 540          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.316e-27
Identity = 62/145 (42.76%), Postives = 93/145 (64.14%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            NK+++EE +RS+HDALCV R L++  + + GGGA EI  +I + A A    GV+ Y  RAFA+AL+ IP  LAEN+GL PI T++ ++N+   +   N GI+       D+  +NV + L+     I LA++ V+ ILKIDD+I+
Sbjct:  387 NKLVLEEAERSLHDALCVVRCLVKKRAQIAGGGAPEIEMAIQLAAHAQTLEGVDAYCFRAFANALEVIPSTLAENAGLNPIATVTELRNRH-AQGEKNAGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDIIN 530          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 5.656e-27
Identity = 60/145 (41.38%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  394 NKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 5.656e-27
Identity = 60/145 (41.38%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  394 NKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 5.656e-27
Identity = 60/145 (41.38%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  394 NKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 120.939 bits (302), Expect = 5.656e-27
Identity = 60/145 (41.38%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  394 NKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.666e-26
Identity = 59/145 (40.69%), Postives = 96/145 (66.21%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RA++DAL+ IP  LAEN+GL PI T++ ++N+   + +   GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  391 NKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAVRLAEYSRTLGGMEAYCVRAYSDALEVIPSTLAENAGLNPISTVTELRNRH-AQGDKMAGINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVVN 534          
The following BLAST results are available for this feature:
BLAST of CN181617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
TCPE_CAEEL2.442e-4662.84T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPE_YEAST8.686e-4457.64T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPE_ENCCU1.301e-3146.90T-complex protein 1 subunit epsilon OS=Encephalito... [more]
TCPD_BOVIN2.539e-2742.07T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_AEDTR3.316e-2742.76T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPD_RAT5.656e-2741.38T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_PONAB5.656e-2741.38T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_MOUSE5.656e-2741.38T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_HUMAN5.656e-2741.38T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_TAKRU3.666e-2640.69T-complex protein 1 subunit delta OS=Takifugu rubr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001D12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181617 ID=CN181617; Name=CN181617; organism=Citrus sinensis; type=EST; length=655bp
GGCAAATCTAAAATTAAACAAGCAAAATCATCAATTCTCACTACCAGAAA
AAGTAACTCACGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAG
TCAGTCGTTATCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATG
AAATGCATTCTTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAAT
GAATCAATATTCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCT
TCACAACTTGTGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTC
TCAAAGACATTTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTC
TATTCCGCAGTTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCG
ATAGCGTCTCAATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGG
ATAGCATCCAACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCC
CGGATATCTATCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAG
CTGCACCCCCGCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCC
ACACACAAGGCATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTT
GTTAC
back to top