CN181617

Overview
NameCN181617
Unique NameCN181617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  222 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIREN--NPNCGIDCNDV-GTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 650
            +  I E +RS++DA+ + R  ++ N IV GGGA E+  S  +   + +  G  Q  I AFA AL+ IP  +A+N+G   I+ L+ ++ +   E+  + N G+D N V G  +  E  V+E +I ++     AT+    IL ID+ +
Sbjct:  379 EQFIAEAERSLNDAIMIVRRCMKANKIVPGGGAIELEISRLLRLHSRKTEGKVQLVINAFAKALEVIPKTIADNAGHDSIQVLNKLRQKHALESDQSKNFGVDINAVDGIGNNFENFVWEPIIVRKNAFSAATEAACTILSIDETV 524          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  222 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 650
            +  +EET+RS+HDA+ + R  I+N+S+V GGGA E+  S  +   +   PG +Q  I A+A AL+ IP  L +N+G      L+ ++ +   +     G+D N+    D  E  V+E  I +   +  A++   +I+ +D+ I
Sbjct:  379 EQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRAKH-AQGGMWYGVDVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETI 520          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPQ_DICDI (T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.491e-14
Identity = 43/141 (30.50%), Postives = 73/141 (51.77%), Query Frame = -3
Query:  222 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 644
            ++++ +R+I D + V + + ++   + G GA EI  S  + A AD  PG+ QY+IR +A+A + IP  LAE SG    + +S +     +  N N G+D        + E +V +    K   I LAT     +L++D +I
Sbjct:  378 ILDDIERAIDDGVNVFKGMCKDGRFLAGAGAFEIEASRKLQAFADATPGLSQYSIRQYAEAFEIIPRTLAETSGHDSSKAISNIYAAHTK-GNTNYGLDIESGQPKSVLEMDVLDAFASKLFAIKLATNTANTVLRVDQII 517          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.491e-14
Identity = 44/143 (30.77%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  222 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 650
            +  +EET+RS+HDA+ + R  I+N+S+V GGGA E+  S  +   +   PG +Q  I A+A AL+ IP  L +N+G      L+ ++ +   +     G+D N+    D  E  V+E  + +   +  A++   +I+ +D+ I
Sbjct:  379 EQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARH-AQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 520          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.491e-14
Identity = 44/143 (30.77%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  222 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 650
            +  +EET+RS+HDA+ + R  I+N+S+V GGGA E+  S  +   +   PG +Q  I A+A AL+ IP  L +N+G      L+ ++ +   +     G+D N+    D  E  V+E  + +   +  A++   +I+ +D+ I
Sbjct:  379 EQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARH-AQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 520          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPH_ENCCU (T-complex protein 1 subunit eta OS=Encephalitozoon cuniculi GN=CCT7 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 44/144 (30.56%), Postives = 72/144 (50.00%), Query Frame = -3
Query:  222 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDV---GTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 644
            ++EE  RS+HDA+CV R  +R   +V GGG+ E+  S  +   + +Y     +  +A   A + IP+ LA N GL  I T+     Q +R+ + N G  C  +   G  DM++  ++E L  K+  +  +      I+ ID  I
Sbjct:  368 VLEEIGRSVHDAVCVVRTALRTRKVVTGGGSVEMELSRIIREKSMKYDDKRMFVAKAVGQAFEKIPLLLARNFGLDTISTI-----QDLRKRHAN-GDSCEGISIDGARDMQKLGIYEPLEVKKNMVKASFSAAASIIMIDSTI 505          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = -3
Query:  222 IEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 641
            I E +RS+HDA+ + ++ ++NN +V GGGA E+  S  +   +    G +Q  I AFA +L+ IP  L +N+G      L+ ++ Q  +      G+D +  G  +  E+ V+E    K   IL AT+   +IL +D+ I
Sbjct:  387 IAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHAK-GEMWAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETI 525          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 43/147 (29.25%), Postives = 80/147 (54.42%), Query Frame = -3
Query:  210 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 650
            +  I+E +RS+HD++ + R   ++ S+V GGGA E+  S  +   +    G +Q  I AFA AL+ IP  +A+N+G    + L+ ++ Q+  +     G+D  + G  D  E  ++E  + K   I+ AT+   +IL +D+ +  ++
Sbjct:  379 EQFIDEAERSLHDSIMIVRRARKHRSVVAGGGAIEMEVSKYLRDYSLSIEGKKQLLINAFAKALEVIPRQIADNAGFDSTDILNQLR-QKHAQGEKWFGVDIVNEGICDTYESAIWEPSLVKLNSIVAATEATCLILSVDETVQNNQ 524          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = -3
Query:  210 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNC---GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 653
            +K ++ ET+R++ DAL VARNL+    +V GGGA E+A S  +     + P        A A AL+ IP  LA+N G   I  L+A++ +            GID       DM  +N++E L  K Q    A +   ++L+IDD++S S+
Sbjct:  382 SKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAASQLLTRKQVKGP------YTAVAHALEIIPRTLAQNCGANTIRALTALRAKHASHTGDGVCAWGIDGESGEIVDMNVKNIWEPLAVKLQTYKTAVETAILLLRIDDIVSGSK 526          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 43/143 (30.07%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  222 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 650
            +  +EET+RS+HDA+ + R  I+N+S+V GGGA E+  S  +   +   PG +Q  I A+A AL+ IP  L +N+G      L+ ++ +   +     G+D N+    D  +  V+E  + +   +  A++   +I+ +D+ I
Sbjct:  379 EQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARH-AQGGMWYGVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETI 520          
The following BLAST results are available for this feature:
BLAST of CN181617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
TCPH_TETPY1.887e-1432.88T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPH_CHICK3.219e-1431.47T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPQ_DICDI5.491e-1430.50T-complex protein 1 subunit theta OS=Dictyostelium... [more]
TCPH_PONAB5.491e-1430.77T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN5.491e-1430.77T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPH_ENCCU7.172e-1430.56T-complex protein 1 subunit eta OS=Encephalitozoon... [more]
TCPH_SCHPO9.367e-1432.14Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPH_DICDI9.367e-1429.25T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPG_DROME9.367e-1433.77T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPH_MOUSE1.223e-1330.07T-complex protein 1 subunit eta OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181617 ID=CN181617; Name=CN181617; organism=Citrus sinensis; type=EST; length=655bp
GGCAAATCTAAAATTAAACAAGCAAAATCATCAATTCTCACTACCAGAAA
AAGTAACTCACGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAG
TCAGTCGTTATCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATG
AAATGCATTCTTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAAT
GAATCAATATTCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCT
TCACAACTTGTGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTC
TCAAAGACATTTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTC
TATTCCGCAGTTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCG
ATAGCGTCTCAATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGG
ATAGCATCCAACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCC
CGGATATCTATCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAG
CTGCACCCCCGCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCC
ACACACAAGGCATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTT
GTTAC
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