CN181617

Overview
NameCN181617
Unique NameCN181617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:572..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 45/144 (31.25%), Postives = 71/144 (49.31%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            NK  + + K ++ D L   RN I +  +V G GA E+A + A+        G  Q  ++AFADAL  IP  LA+NSG    ETL  ++ +   E+    G+D N        E  V++    K+Q +   T +   IL +D+++
Sbjct:  380 NKHTLTQIKDAVRDGLRAVRNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEH-SESGQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPZ_BOVIN (T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 45/144 (31.25%), Postives = 71/144 (49.31%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            NK  + + K +I D L   +N I +  +V G GA E+A + A+        G  Q  ++AFADAL  IP  LA+NSG    ETL  V+ +   E+    G+D N        E  +++    K+Q +   T +   IL +D+++
Sbjct:  380 NKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEH-SESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPQ_CANAL (T-complex protein 1 subunit theta OS=Candida albicans GN=CCT8 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = -3
Query:  222 IEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 641
            +++ +R+I D +   + LI++N ++ G GA EI     + A     PG+ Q AI++FA A + IP  LAE SG    E LS +      +     GI   D+ + ++ +  V + L  K+  I LA      IL ID +I
Sbjct:  382 LDDIERAIDDGVNSIKGLIKDNRLLPGAGAVEIELMKRITAYQST-PGLLQLAIKSFAKAFEVIPRVLAETSGHDSSEILSKLHAAHAEDTGLRAGI---DIDSGEVADTAVLDILATKKSAIDLAVDATNTILSIDQII 517          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 43/144 (29.86%), Postives = 74/144 (51.39%), Query Frame = -3
Query:  222 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPN-CGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 650
            K  IEE +RSI+DA+ +    I N+ IV G G+ E+  S  +   +      EQ  + +FA AL++IP  L+ N+G    + L+ ++ +   + +    G+DC +    +  +  +FE    K+  I  AT+   +IL ID+ I
Sbjct:  381 KQFIEEVERSINDAIMIVLRCITNSEIVPGAGSIEMQLSKYLRIYSRSICNKEQIVLFSFAKALESIPRHLSHNAGYDSTDILNKLRKKHSEQTSDIWYGVDCMEGDIINAYDNCIFEVTKIKRNVIYSATEAACLILSIDETI 524          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPZ_HUMAN (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 44/144 (30.56%), Postives = 71/144 (49.31%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            NK  + + K ++ D L   +N I +  +V G GA E+A + A+        G  Q  ++AFADAL  IP  LA+NSG    ETL  ++ +   E+    G+D N        E  V++    K+Q +   T +   IL +D+++
Sbjct:  380 NKHTLTQIKDAVRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEH-SESGQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 45/144 (31.25%), Postives = 71/144 (49.31%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            NK  + + K +I D L   +N I +  +V G GA E+A + A+        G  Q  ++AFADAL  IP  LA+NSG    ETL  V+ +   E+    G+D +        E  V++    K+Q +   T +   IL +D+++
Sbjct:  380 NKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVALAEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEH-SESGQLVGVDLSTGEPMVAAEMGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 42/143 (29.37%), Postives = 70/143 (48.95%), Query Frame = -3
Query:  222 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 650
            K  IE+ K ++ D L   +N I +  +V GGGA +IA    +    +   G  +  I+AFADAL  +P  LA+NSG  P++T+  +K Q+        G+D       D   + +F+     +Q    +  +   +L ID++I
Sbjct:  383 KHQIEQIKDALRDGLRAVKNTIEDKCVVPGGGAFQIAAYADLMKFKETITGRTKLGIQAFADALLVVPKTLAQNSGFDPMDTI--IKLQEEYAKGHIVGLDVESGEPMDPVSEGIFDQYSVLKQVYRSSPVIASQLLLIDEII 523          
The following BLAST results are available for this feature:
BLAST of CN181617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
TCPZ_PONAB3.331e-1131.25T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPZ_BOVIN4.351e-1131.25T-complex protein 1 subunit zeta OS=Bos taurus GN=... [more]
TCPQ_CANAL4.351e-1131.43T-complex protein 1 subunit theta OS=Candida albic... [more]
TCPH_PLAF74.351e-1129.86T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
TCPZ_HUMAN7.422e-1130.56T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]
TCPZ_MOUSE9.693e-1131.25T-complex protein 1 subunit zeta OS=Mus musculus G... [more]
TCPZ_DICDI9.693e-1129.37T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181617 ID=CN181617; Name=CN181617; organism=Citrus sinensis; type=EST; length=655bp
GGCAAATCTAAAATTAAACAAGCAAAATCATCAATTCTCACTACCAGAAA
AAGTAACTCACGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAG
TCAGTCGTTATCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATG
AAATGCATTCTTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAAT
GAATCAATATTCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCT
TCACAACTTGTGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTC
TCAAAGACATTTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTC
TATTCCGCAGTTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCG
ATAGCGTCTCAATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGG
ATAGCATCCAACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCC
CGGATATCTATCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAG
CTGCACCCCCGCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCC
ACACACAAGGCATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTT
GTTAC
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