CN181617

Overview
NameCN181617
Unique NameCN181617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25
Identity = 56/143 (39.16%), Postives = 91/143 (63.64%), Query Frame = -3
Query:  225 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 653
            NK++++E +RS+HDALCV R+L++   ++ GGGA EI  S  V A +    G+  Y +RA+A+AL+ IP  LAEN+GL PI  ++ ++N+   +   N GI+       ++ ++NV + L+     + LAT+ V M+LKIDD+
Sbjct:  388 NKLVLDEAERSLHDALCVIRSLVKKKFLIAGGGAPEIEVSQQVTAFSKTLTGITSYCVRAYAEALEIIPYTLAENAGLHPISIVTELRNKH-AQGEINSGINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDI 529          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            NK+++EE  RSIHDALCV R L++  +++ GGGA E+  ++ +   A    G  QY  RAFADAL+ IP  LAEN+GL PI T++ ++N      N + G++       DM E++V + L+     I  A++ V+ ILKIDD++
Sbjct:  394 NKLVLEEADRSIHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNLAQTQHGATQYCWRAFADALELIPYTLAENAGLSPIHTVTELRNNH-ANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIV 536          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.853e-24
Identity = 55/143 (38.46%), Postives = 91/143 (63.64%), Query Frame = -3
Query:  225 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 653
            N+++++ET+RSIHDALCV R L++  +++ GGGA EI  S  + + A++  GVEQ+  + FA AL+ IP  LAEN+GL  I  ++ ++N+       N GI     G ++  +++V + ++     I LA++ VK IL+IDD+
Sbjct:  388 NQLVLDETERSIHDALCVVRCLVKEKALIAGGGAPEIEVSRVLMSEANKLSGVEQFVYQEFAQALEVIPTTLAENAGLNSINVVTDLRNRH-ANGEKNAGISVRRSGASNTYDEHVLQPVLVSSSAITLASECVKSILRIDDI 529          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.984e-24
Identity = 63/142 (44.37%), Postives = 88/142 (61.97%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            +++E +R++ DA+ V ++++ +  I+ GGGAAEI  SI +D  A    G EQ AI AFA+AL  IP  LAEN+GL PIETL  V     +E  P  GID  +    DM E+ V E +  K+Q I  A++   MIL+IDDVI+
Sbjct:  383 VVDEVERALEDAVKVVKDILEDGKIIAGGGAAEIELSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH-KEKGPTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIA 523          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.955e-23
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = -3
Query:  210 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 644
            +++E +R++ DA+ V ++++ +  I+ GGGA+EI  SI +D  A    G EQ AI AFA+AL  IP  LAEN+GL PIETL  V     +E     GID  +    DM E+ V E +  K+Q I  A++   MIL+IDDVI+ S+
Sbjct:  383 VVDEVERALEDAIKVVKDILEDGKIIAGGGASEIELSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH-KEKGQTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.459e-22
Identity = 54/143 (37.76%), Postives = 88/143 (61.54%), Query Frame = -3
Query:  225 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 653
            N M+++ET+RS+HDALCV R L++   ++ GGGA EI  S  ++  +    GVE Y  + FA AL+ IP  LAEN+GL  I+ ++ ++++     + N GI     GT +  E+++ + ++     I LA++ VK IL+IDD+
Sbjct:  384 NSMILDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLERESRSMEGVEAYIWQEFAQALEVIPTTLAENAGLNSIKVITELRSRH-ENGDVNEGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 525          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.345e-22
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = -3
Query:  210 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 644
            +++E +R+I DA+ V    + +  +V GGGA E+  +  +   AD   G EQ A+ AFADAL+ IP  LAENSGL PI+ L  ++ +   +     GID  D    DM E+ V E L  K Q +  AT+  +MIL+IDDVI+  E
Sbjct:  385 VVDEAERAIEDAIGVVAAALEDGKVVAGGGAPEVEVARQLRDFADGVEGREQLAVEAFADALEIIPRTLAENSGLDPIDVLVQLRAKH-EDGQVTAGIDVYDGDVKDMLEEGVVEPLRVKTQALASATEAAEMILRIDDVIAARE 528          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 54/143 (37.76%), Postives = 86/143 (60.14%), Query Frame = -3
Query:  225 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 653
            N M+I+ET+RS+HDALCV R L++   ++ GGGA EI  S  +   A    GV+ +  + FA AL+ IP  LAEN+GL  I+ ++ ++++       N GI     GT +  E+++ + ++     I LA++ VK IL+IDD+
Sbjct:  383 NNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKH-ENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 524          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.594e-21
Identity = 56/145 (38.62%), Postives = 88/145 (60.69%), Query Frame = -3
Query:  225 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENN--PNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 653
            N M+++ET+RS+HDALCV R L++  +++ GGGA EI  S  +   A    GVE +  + +A+AL+ IP  LAEN+GL    +L+ V   ++R  N   N GI     GT++  E ++ + ++     I LA++ VK IL+IDD+
Sbjct:  385 NNMVLDETERSLHDALCVIRCLVKERALIAGGGAPEIEVSYRLMKEARTMEGVEAFVWQEYAEALEVIPTTLAENAGL---NSLNVVTELRLRHENGESNSGISVRRSGTSNTYEDHILQPVLVSTSAIRLASECVKSILRIDDI 526          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.594e-21
Identity = 51/143 (35.66%), Postives = 87/143 (60.84%), Query Frame = -3
Query:  225 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 653
            N ++++ET+RS+HDALCV R L++  +++ GGGA EI  S  +   +    GVE +  + FA+AL+ IP  LAEN+GL  I+ ++ ++++       N GI     GT +  ++++ + ++     I LA + VK IL+IDD+
Sbjct:  384 NNVVLDETERSLHDALCVIRCLVKERALIAGGGAPEIEVSRTIMRESRAMQGVEAFVWQEFAEALEVIPTTLAENAGLNSIKVVTELRSRH-ESGETNAGISVRRSGTTNTYDEHILQPVLVSTSAITLAAECVKSILRIDDI 525          
The following BLAST results are available for this feature:
BLAST of CN181617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
TCPD_DICDI5.294e-2539.16T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPD_CAEEL1.540e-2440.97T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
TCPD_DEBHA5.853e-2438.46T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
THS_PYRAB9.984e-2444.37Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THS_PYRHO4.955e-2342.76Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
TCPD_CANGA2.459e-2237.76T-complex protein 1 subunit delta OS=Candida glabr... [more]
THS_METKA9.345e-2240.69Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
TCPD_YEAST1.220e-2137.76T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPD_KLULA1.594e-2138.62T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
TCPD_ASHGO1.594e-2135.66T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181617 ID=CN181617; Name=CN181617; organism=Citrus sinensis; type=EST; length=655bp
GGCAAATCTAAAATTAAACAAGCAAAATCATCAATTCTCACTACCAGAAA
AAGTAACTCACGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAG
TCAGTCGTTATCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATG
AAATGCATTCTTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAAT
GAATCAATATTCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCT
TCACAACTTGTGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTC
TCAAAGACATTTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTC
TATTCCGCAGTTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCG
ATAGCGTCTCAATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGG
ATAGCATCCAACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCC
CGGATATCTATCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAG
CTGCACCCCCGCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCC
ACACACAAGGCATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTT
GTTAC
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