CN181617

Overview
NameCN181617
Unique NameCN181617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:572..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = -3
Query:  210 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 644
            +++E +R++ DA+ V ++++ +  IV  GGA EI  SI +D  A    G EQ AI AFA+AL  IP  LAEN+GL PIETL  V     +E  P  G+D  +    DM E+ V   +   +Q I  A++   MIL+IDDVI+ S+
Sbjct:  383 VVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELSIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH-KEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPQ_SCHPO (Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe GN=cct8 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.719e-21
Identity = 43/145 (29.66%), Postives = 90/145 (62.07%), Query Frame = -3
Query:  222 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID--CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 650
            K  +++ +R+I D + + + L+++N +++G GA+++   I + +  ++ PG+ Q+AI+ + +A + +P  ++EN+GL P + +S +     +EN  + G+D  C + GT D +E  +F+ L+ K+  I LAT+ V  +L +D V+
Sbjct:  382 KTYLDDLERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLISVGEKTPGIYQHAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQVV 526          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 59/142 (41.55%), Postives = 83/142 (58.45%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            +IEE  R++ DA+ V    I +  IV GGGAAEI  ++ +   A+   G EQ A+RAFADAL+ +P  LAEN+GL  IE L  ++ +    NN   G++       +M E  V E L  K Q I  AT+  +M+L+IDDVI+
Sbjct:  378 VIEEVARAVDDAIGVVACTIEDGKIVAGGGAAEIELAMKLRDYAEGVSGREQLAVRAFADALEVVPRTLAENAGLDAIEMLVKLRAKHAEGNNAYYGLNVFTGDVENMTENGVVEPLRVKTQAIQSATEATEMLLRIDDVIA 519          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 59/145 (40.69%), Postives = 86/145 (59.31%), Query Frame = -3
Query:  210 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 644
            +++E +R++ DA+ V ++++ +  IV  GGA EI  +I +D  A    G EQ AI AFA+AL  IP  LAEN+GL PIETL  V     +E  P  G+D  +    DM E+ V   +   +Q I  A++   MIL+IDDVI+ S+
Sbjct:  383 VVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH-KEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21
Identity = 58/145 (40.00%), Postives = 86/145 (59.31%), Query Frame = -3
Query:  210 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 644
            +++E +R++ DA+ V ++++ +  I+  GGA EI  +I +D  A    G EQ AI AFA+AL  IP  LAEN+GL P+ETL  V     +E  P  G+D  +    DM E+ V   L   +Q I  A++   MIL+IDDVI+ S+
Sbjct:  383 VVDEVERALEDAVKVVKDIVEDGKILPAGGAPEIELAIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPVETLVKVIAAH-KEKGPTIGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            ++EE  R+I DA+ V +  +    IV GGGA EI  +  +   A+   G EQ A++AFADAL+ IP  LAENSGL PI+ L  ++    +E     G+D  +    DM E+ V E L  K Q I  AT+   M+L+IDDVI+
Sbjct:  380 VVEEVARAIDDAIGVVKCALEEGKIVAGGGATEIELAKRLRKFAESVAGREQLAVKAFADALEVIPRTLAENSGLDPIDMLVKLRAAHEKEGGEVYGLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDVIA 521          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            +++E +RS+HDAL V  + I +  IV GGGA E   +  +   A + PG  Q A+ AFA A++A+P ALA N+G  PIE L  +++   +  N   G+D +     DM  + V E +  K   +  AT+V  +IL+IDDVI+
Sbjct:  390 LVDEAERSLHDALSVVADAIMDGKIVAGGGAVEAEVAKVLYEYASKLPGKTQLAVEAFARAVEALPQALAHNAGHDPIEVLVKLRSAHEKPENKWYGVDLDTGEIVDMWSRGVLEPMRVKLNALKAATEVASLILRIDDVIA 531          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 52/143 (36.36%), Postives = 86/143 (60.14%), Query Frame = -3
Query:  225 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 653
            N + +EE +RS+HDALCV R L++  +++ GGG+ EI  +  +   A +  G E   IRAF++AL+ IP+ LAEN+GL  I+ ++ ++++         GI+       ++ E+NV + L+     I LA +  KMI+KIDD+
Sbjct:  382 NLLTLEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRH-ANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDI 523          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.128e-20
Identity = 58/142 (40.85%), Postives = 81/142 (57.04%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            +++E +RS+ DA+ V +  + +  +V GGGA EI  ++ +   A    G EQ A  AFA AL+ IP ALAENSGL PI+ L  ++     E     G+D        M+E+ V E L  K Q I  AT+V  MIL+IDDVI+
Sbjct:  383 VVDEVERSLQDAIKVVKTALESGKVVAGGGAPEIEVALKIRDWAPTLGGREQLAAEAFASALEVIPRALAENSGLDPIDILVELRKAH-EEGKTTYGVDVFSGEVACMKERGVLEPLKVKTQAITSATEVAIMILRIDDVIA 523          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = -3
Query:  219 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 650
            K + EE +R++ DA+ V  + + +  +V GGGA E+  +  +   AD   G EQ A+ AFADAL+ +P  LAEN+GL  I+ L  V  +   E +P  GID  D    DM+E  V E    K+Q I  A +  +MIL+IDD+I+
Sbjct:  374 KHVAEEMERALEDAIGVVASTLEDREVVAGGGAPEVEIARKLREYADTISGREQLAVSAFADALEIVPKTLAENAGLDSIDVL--VDLRAAHEESPYMGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMIA 515          
The following BLAST results are available for this feature:
BLAST of CN181617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
THSB_THEK12.082e-2141.38Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
TCPQ_SCHPO2.719e-2129.66Probable T-complex protein 1 subunit theta OS=Schi... [more]
THS_METTL3.551e-2141.55Thermosome subunit OS=Methanococcus thermolithotro... [more]
THSB_PYRKO4.638e-2140.69Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THS_DESSY6.057e-2140.00Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THS_METJA1.762e-2041.55Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THSB_AERPE3.926e-2038.03Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]
TCPD_SCHPO3.926e-2036.36T-complex protein 1 subunit delta OS=Schizosacchar... [more]
THSA_ARCFU5.128e-2040.85Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THSA_METTH6.697e-2039.58Thermosome subunit alpha OS=Methanobacterium therm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181617 ID=CN181617; Name=CN181617; organism=Citrus sinensis; type=EST; length=655bp
GGCAAATCTAAAATTAAACAAGCAAAATCATCAATTCTCACTACCAGAAA
AAGTAACTCACGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAG
TCAGTCGTTATCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATG
AAATGCATTCTTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAAT
GAATCAATATTCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCT
TCACAACTTGTGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTC
TCAAAGACATTTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTC
TATTCCGCAGTTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCG
ATAGCGTCTCAATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGG
ATAGCATCCAACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCC
CGGATATCTATCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAG
CTGCACCCCCGCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCC
ACACACAAGGCATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTT
GTTAC
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