CN181617

Overview
NameCN181617
Unique NameCN181617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:572..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPQ_HUMAN (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 1.650e-18
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  222 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID--CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 644
            ++++ +R++ D +   + L R+  +V GGGA EI  +  + +  +  PG+EQYAI+ FA+A +AIP ALAENSG++  E +S +     +E N N G+D         DM E  + +T +GK   I LAT     +L++D +I
Sbjct:  384 LMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVH-QEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQII 525          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 47/145 (32.41%), Postives = 83/145 (57.24%), Query Frame = -3
Query:  210 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 644
            +++E +R + DAL V+   + +  ++ GGGA E+  +  +   AD   G EQ A+ AFAD+L+ +P  LAEN+GL  I+TL  +++    +++ + G++       D  E  V E    K+Q +  A++   ++LKIDD+IS  +
Sbjct:  385 VVDELERGVSDALDVSAQTLSDGRVLPGGGATEVEVASRLRDFADSVSGREQLAVEAFADSLELVPRVLAENAGLDSIDTLVDLRSAHENDDDEHIGLNVLSGDLEDTFEAGVVEPAHAKEQAVTSASEAANLVLKIDDIISAGD 529          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID-CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            N M ++E +RSI+DAL   RN++    IV GGGA E   ++ +   A    G EQ AI  FA+AL+ IPM LAE +G++PI+TL  ++ +  +    N G+D  N    +DM   NV E +  K Q +  A +    ILKIDD+I+
Sbjct:  386 NDMALDEAERSINDALHSLRNVLMKPMIVAGGGAVETELALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQTLMDLRAKHAK-GLINAGVDVMNGKIADDMLALNVLEPVRVKAQVLKSAVEAATAILKIDDLIA 530          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPQ_CAEEL (T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=Y55F3AR.3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 49/140 (35.00%), Postives = 81/140 (57.86%), Query Frame = -3
Query:  222 IEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 641
            I++ +R++ DA+   + L ++  ++ G GA EI  +  +++   + PG+EQYAI+ FA AL+ +P A+AEN+G+   ETL+ +  + +     N GID     T D    N+F+   GK+  I LAT     ILK+D +I
Sbjct:  418 IDDVERAVDDAVNTYKALTKDGKLLAGAGAVEIELAKEIESFGAKAPGLEQYAIKKFAHALETLPKAIAENAGMPTTETLTKLYAEHV-AGKKNAGIDIWKRETMDAVVNNIFDLYAGKRLAIKLATDAASTILKVDQII 556          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 49/146 (33.56%), Postives = 86/146 (58.90%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNP-NCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            +K ++ E +R++HDAL VARN++ N  +V GGGA E+  +  +   + +  G++Q+  +A A AL+ IP  LA+N G   +  ++ ++ +   +      GID N     DMRE NV++ +  KQQ +  + +   M+L+IDD++S
Sbjct:  382 SKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKIEGMQQWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHANDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVS 527          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.814e-18
Identity = 50/142 (35.21%), Postives = 83/142 (58.45%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            +++ET+R++ DAL    ++IR+   V GGGA EI  +  +   A +  G EQ AI A+A+A++ + M LAEN+GL PI+ L  +++    E N   G++       DM +  V E  + K   I  AT+ V ++L+IDD+++
Sbjct:  389 VVDETERALRDALGTVADVIRDGRAVAGGGAVEIEIAKRLRKYAPQVGGKEQLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNKWYGLNLFTGNPEDMWKLGVIEPALVKMNAIKAATEAVTLVLRIDDIVA 530          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.814e-18
Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = -3
Query:  213 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDC-NDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 653
            N M ++E +RS++DAL   RN++    IV GGGA E   ++ +   A    G EQ AI  FA+AL+ IPM LAE +G++PI+ L  ++ +  +    N GID  N    +DM + NV E +  K Q +  A +    ILKIDD+++ S
Sbjct:  386 NDMALDEAERSLNDALHSLRNVLMKPMIVAGGGAVESELALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQALMDLRARHAK-GLVNSGIDAVNGKIADDMMKINVIEPVRVKSQVLKSAVEAATAILKIDDLVAAS 532          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 49/142 (34.51%), Postives = 83/142 (58.45%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            +++ET+R++ DAL    ++IR+   V GGGA EI  +  +   A +  G EQ AI A+A+A++ + M LAEN+GL PI+ L  +++    E N   G++       DM +  V E  + K   +  AT+ V ++L+IDD+++
Sbjct:  389 VVDETERALRDALGTVADVIRDGRAVAGGGAVEIEIAKRLRKYAPQVGGKEQLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNKWYGLNLFTGNPEDMWKLGVIEPALVKMNAVKAATEAVTLVLRIDDIVA 530          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPQ_CHICK (T-complex protein 1 subunit theta OS=Gallus gallus GN=CCT8 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  222 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCG--IDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 644
            ++++ +R++ D +   + L R+  +V GGGA EI  +  + +  +  PG++QYAI+ FA+A +AIP ALAENSG++  E +S +     +E N N G  I+       DM E  + +T +GK   I LAT     +L++D +I
Sbjct:  384 LMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLDQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVH-QEGNKNVGFDIEAEAAAVKDMLEAGILDTYLGKYWGIKLATNAAVTVLRVDQII 525          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 54/142 (38.03%), Postives = 84/142 (59.15%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            +I+E +R++ DA+ V ++++ + +++  GGA EI  +I +D  A +  G E  AI  FADAL  IP  LAEN+GL  +E L  V ++  +      GID  +    DM E+ + E L  K+Q I  A++   MIL+IDDVI+
Sbjct:  383 VIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIA 523          
The following BLAST results are available for this feature:
BLAST of CN181617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
TCPQ_HUMAN1.650e-1835.66T-complex protein 1 subunit theta OS=Homo sapiens ... [more]
THSB_HALSA2.154e-1832.41Thermosome subunit beta OS=Halobacterium salinariu... [more]
THSA_SULTO2.154e-1839.73Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
TCPQ_CAEEL2.154e-1835.00T-complex protein 1 subunit theta OS=Caenorhabditi... [more]
TCPG_OXYGR2.154e-1833.56T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
THSB_SULSH2.814e-1835.21Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
THSA_SULAC2.814e-1838.51Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]
THSB_SULSO3.675e-1834.51Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
TCPQ_CHICK3.675e-1834.97T-complex protein 1 subunit theta OS=Gallus gallus... [more]
THSA_THEK16.268e-1838.03Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181617 ID=CN181617; Name=CN181617; organism=Citrus sinensis; type=EST; length=655bp
GGCAAATCTAAAATTAAACAAGCAAAATCATCAATTCTCACTACCAGAAA
AAGTAACTCACGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAG
TCAGTCGTTATCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATG
AAATGCATTCTTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAAT
GAATCAATATTCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCT
TCACAACTTGTGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTC
TCAAAGACATTTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTC
TATTCCGCAGTTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCG
ATAGCGTCTCAATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGG
ATAGCATCCAACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCC
CGGATATCTATCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAG
CTGCACCCCCGCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCC
ACACACAAGGCATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTT
GTTAC
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