CN181617

Overview
NameCN181617
Unique NameCN181617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.051e-17
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = -3
Query:  210 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 644
            +++E +R + DAL V  + + +  ++ GGGA E+  +  +   AD   G EQ A+ A+ADAL+ +P  LAEN+GL  I+TL  ++     +     G++       D  +  V ET   K+Q +  A++   ++LKIDD+I+  +
Sbjct:  384 VVDELERGVQDALDVVASTVADGRVLAGGGAIEVELASRLRNYADSVSGREQLAVEAYADALELVPRVLAENAGLDSIDTLVDLRAAH-EDGQVRAGLNVFTGEVEDAFDAGVVETAHAKEQAVASASEAANLVLKIDDIIAAGD 527          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16
Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVG---TNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            N M ++E +RSI+DAL   RN++    I+ GGGA E+  ++ +   A    G EQ AI AFADAL+ IP  LAE +GL+ I  L  ++ +  +    N G+D   +G    +D+   N+ E +  K Q +  AT+    ILKIDD+I+
Sbjct:  385 NDMALDEAERSINDALHALRNILLEPVILPGGGAIELELAMKLREYARSVGGKEQLAIEAFADALEEIPTILAETAGLEAISALMDLRARHAK-GLTNTGVDV--IGGKIVDDVYALNIIEPIRVKAQVLKSATEAATAILKIDDLIA 529          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTND-MREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            N M+ +E +RS++DA    RNL+    IV GGGA E   +  +   A + PG EQ A  AFADAL+     L+E +G+ PI  L+ ++++       N GID       D M E  V ++L  K+Q +  AT+    ILKIDD+I+
Sbjct:  373 NNMVTDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRENAGKVPGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHKH-ANGLKNAGIDIVKARIYDNMLELKVIDSLKVKEQVLKSATEAATAILKIDDMIA 517          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAEN---------SGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            N+ M++E  RS+HD+LCV +  + +  +V GGGA EIA SI ++  A      EQ A+  F +AL+ IP  LA N         S L+ +   S   +   ++   NCG+D +     +  +  V E ++ K + +  AT+    IL+IDD+I
Sbjct:  381 NEFMVDEVDRSLHDSLCVVKRTLESGYVVPGGGAVEIALSIKLEDFARTLGTKEQTAVAEFCEALNIIPKVLAANAAQDATELVSKLRALHAASQSSDDPAKKELKNCGLDLSLGKVRNNVKAGVLEPMVSKIKSLRFATEAAITILRIDDMI 533          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.016e-16
Identity = 44/141 (31.21%), Postives = 80/141 (56.74%), Query Frame = -3
Query:  222 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 644
            +++E++R+IHDAL V    +  + +  GGG AE+  + AV+ AA   PG +  A+ AFA AL  +P  LA+N+G    E ++ +K     + N   G+D ++    DMR + + E L  KQ  +   ++  +++L++D ++
Sbjct:  378 LLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKAAHY-DGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLLLRVDTIL 517          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 50/142 (35.21%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            +++ET+R++ DAL    ++IR+   V GGGA E+  +  +   A +  G EQ AI A+A AL+ + M L EN G  PI+ L  +++    E N   GI+       DM +  V E  + K   I  AT+   +IL+IDD+I+
Sbjct:  390 VVDETERALRDALGTVADVIRDGRAVAGGGAVELEIAKRLRKYAPQIGGKEQLAIEAYASALENLVMILIENGGYDPIDLLVKLRSAHENEANKWYGINVFTGQVEDMWKLGVIEPAVVKMNAIKAATEAATLILRIDDLIA 531          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = -3
Query:  222 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 644
            ++EE +RSIHDALCV    +     V G G +E+  S AVD  A   PG +  AI +FA AL  IP  +A N+G    E +S +K     + +   G++  D    +  E  V E+   KQQ ++ A +  +MI+++DD++
Sbjct:  381 ILEEAERSIHDALCVLAVTVAETRTVLGAGCSEMIMSKAVDELAAITPGKKAMAIESFAKALRQIPTIIANNAGYDSSELVSQLKAAH-HQGDKKAGLNMRDGCIGNAEELGVIESFKVKQQVLVSAHEAAEMIMRVDDIL 520          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 46/145 (31.72%), Postives = 82/145 (56.55%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            +K ++ E +R++ DA+ V RN++ +  +V GGGA+E++ +  +   +    GVEQ+  RA A AL+ IP  L +N G   I  L++++ +  +E     G+D       DM+E  ++E L  K Q    A +   ++L+IDD++S
Sbjct:  379 SKEILAEVERNLQDAMQVCRNVVIDPYLVPGGGASEMSVAHILTEKSKTMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRILTSLRAKHTQEGCQTWGVDGEAGVLADMKELGIWEPLAVKLQTYKTAVETAILLLRIDDIVS 523          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = -3
Query:  210 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVK-------NQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 653
            N   ++E +RS+HDAL V + ++ +  IV G GA E A SI ++  A      EQ AI  FA A+ +IP  LA N+G+   E ++ ++       ++  + +N   G+D N+    D +E  VFE L+ K + +  AT+    IL+IDD+I   E
Sbjct:  378 NDFYVDEMERSLHDALLVVKRVLESKRIVPGAGACETAVSIYLENYALTLSSREQLAIAEFARAMLSIPKQLAVNAGVDSTELVARLRSCHNSSQSKPDQAHNKWWGLDLNNQYVADCKEIGVFEPLVSKIKSLKFATEAAITILRIDDLIKLKE 532          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.867e-16
Identity = 51/142 (35.92%), Postives = 80/142 (56.34%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            +++E +RSI D+L V  + + + +   GGGA     +  + + A +  G +Q AI  FADA++ IP ALAEN+GL PI+ L  ++ +  +  N   GI+       DM +  V E +   +Q I  AT+   MIL+IDDVI+
Sbjct:  381 VVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAK-GNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA 521          
The following BLAST results are available for this feature:
BLAST of CN181617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
THS2_HALVO9.051e-1731.72Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THSA_SULSH1.182e-1637.84Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
THSG_SULSH1.544e-1637.67Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
TCPA_TETPY1.544e-1632.68T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPB_SCHPO2.016e-1631.21Probable T-complex protein 1 subunit beta OS=Schiz... [more]
THSB_SULTO2.633e-1635.21Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
TCPB_DICDI2.633e-1634.75T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPG_XENLA3.439e-1631.72T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPA_SCHMA3.439e-1634.19T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
THSB_THEAC5.867e-1635.92Thermosome subunit beta OS=Thermoplasma acidophilu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181617 ID=CN181617; Name=CN181617; organism=Citrus sinensis; type=EST; length=655bp
GGCAAATCTAAAATTAAACAAGCAAAATCATCAATTCTCACTACCAGAAA
AAGTAACTCACGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAG
TCAGTCGTTATCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATG
AAATGCATTCTTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAAT
GAATCAATATTCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCT
TCACAACTTGTGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTC
TCAAAGACATTTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTC
TATTCCGCAGTTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCG
ATAGCGTCTCAATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGG
ATAGCATCCAACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCC
CGGATATCTATCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAG
CTGCACCCCCGCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCC
ACACACAAGGCATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTT
GTTAC
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