CN181617

Overview
NameCN181617
Unique NameCN181617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.662e-16
Identity = 53/151 (35.10%), Postives = 82/151 (54.30%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVK----NQQI---RENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            N  M +E +RS+HDALCV + ++ + S+V GGGA E A SI ++  A      EQ AI  FA +L  IP  LA N+     + ++ ++      Q+   R+N    G+D ++    D ++  VFE  I K + +  AT+    IL+IDD+I
Sbjct:  381 NDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 531          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.662e-16
Identity = 53/151 (35.10%), Postives = 82/151 (54.30%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVK----NQQI---RENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            N  M +E +RS+HDALCV + ++ + S+V GGGA E A SI ++  A      EQ AI  FA +L  IP  LA N+     + ++ ++      Q+   R+N    G+D ++    D ++  VFE  I K + +  AT+    IL+IDD+I
Sbjct:  381 NDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 531          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPA_ENCCU (T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi GN=TCP1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.662e-16
Identity = 49/149 (32.89%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRE-----NNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            N  +++E +RS+HDA+CV +  + +NS+V GGGA E A S+ ++  A      E  AI  +A++L +IP  L+ N+GL   E ++ + + Q RE      +   GID       D  E  + E  + K + +  AT+    IL+I++VI
Sbjct:  383 NCQLLDEMQRSVHDAVCVLKRTLESNSVVPGGGAVECALSLMLEKFAFTVNSKEHVAIHRYAESLLSIPKILSTNAGLDSNELVANLLSSQSREMANSSGSKFLGIDVTSGKIQDNFEFGIIEPSVNKMKSLKAATEAAISILRINEVI 531          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVK----NQQI---RENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            N  M +E +RS+HDALCV + ++ + S+V GGGA E A SI ++  A      EQ AI  FA +L  IP  LA N+     + ++ ++      Q+   R+N    G+D  +    D ++  VFE  I K + +  AT+    IL+IDD+I
Sbjct:  381 NDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLPVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 531          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.307e-15
Identity = 46/140 (32.86%), Postives = 77/140 (55.00%), Query Frame = -3
Query:  222 IEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 641
            ++E +RS+HDAL V     +    V GGG AE+  S AVD  A    G +  A+ AFA AL  +P  LA+N+G    E +S +++  I       G+D N+    DMR+  + E+   K+  +  A++  +++L++D++I
Sbjct:  377 LDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRS-SIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNII 515          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.229e-15
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  219 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTND-MREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 653
            N M+ +E +RS++DA    RNL+    IV GGGA E   +  +   A +  G EQ A  AFADAL+     L+E +G+ PI  L+ ++++       N GID       D M E  V ++L  K+Q +  AT+    ILKIDD+I+
Sbjct:  373 NNMITDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRDDARKVIGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHKH-ATGLKNAGIDVTKARIYDNMLELRVIDSLKVKEQVLKSATEAATAILKIDDMIA 517          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.229e-15
Identity = 53/142 (37.32%), Postives = 81/142 (57.04%), Query Frame = -3
Query:  219 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 644
            +I+E +R++ DA+ V ++++ + +++  GGA EI  +I+VD  A +  G E  AI  FADAL  IP  LAEN+GL  +E L  V ++  +      GID       DM E+ +   L   +Q I  A   + MIL+IDDVI+
Sbjct:  383 VIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAISVDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEILVKVISEH-KNKGLGIGIDVFAGEPADMLERGIIAPLRVTKQAIKSARAAI-MILRIDDVIA 522          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.229e-15
Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVK----NQQI---RENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            N  M +E +RSIHDALCV + ++ + S+V GGGA E A SI ++  A      EQ AI  FA +L  IP  LA N+     + ++ ++      Q+   R+N    G+D  +    D ++  VFE  + K + +  AT+    IL+IDD+I
Sbjct:  384 NDFMCDEMERSIHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLAVNAAQDATDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKPRDNKQAGVFEPTLVKTKSLKFATEAAITILRIDDLI 534          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.229e-15
Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVK----NQQI---RENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            N  M +E +RS+HDALCV + ++ + S+V GGGA E A SI ++  A      EQ AI  FA +L  IP  LA N+     + ++ ++      Q+   R+N    G+D  +    D ++  VFE  I K + +  AT+    IL+IDD+I
Sbjct:  381 NDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 531          
BLAST of CN181617 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.229e-15
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = -3
Query:  222 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIR-------ENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 653
            N +M++E +RS+HD+LCV R ++ +  +V GGGA E + S+ ++  A      EQ A+  FA AL  IP  LA N+     + ++ ++    +       ++    G+D  +    D +E  + E  + K + +  AT+    IL+IDD+I
Sbjct:  384 NDVMLDEMERSVHDSLCVVRRVLESKKLVAGGGAVETSLSLFLETYAQTLSSREQLAVAEFASALLIIPKVLASNAARDSTDLVTKLRAYHSKAQLIPQLQHLKWAGLDLEEGTIRDNKEAGILEPALSKVKSLKFATEAAITILRIDDLI 534          
The following BLAST results are available for this feature:
BLAST of CN181617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
TCPA_MACFA7.662e-1635.10T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
TCPA_HUMAN7.662e-1635.10T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
TCPA_ENCCU7.662e-1632.89T-complex protein 1 subunit alpha OS=Encephalitozo... [more]
TCPA_BOVIN1.001e-1535.10T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPB_YEAST1.307e-1532.86T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
THSG_SULSO2.229e-1536.99Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
THSA_THEK82.229e-1537.32Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
TCPA_PALPA2.229e-1535.10T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPA_CRIGR2.229e-1535.10T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPA_CAEEL2.229e-1529.80T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001D12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181617 ID=CN181617; Name=CN181617; organism=Citrus sinensis; type=EST; length=655bp
GGCAAATCTAAAATTAAACAAGCAAAATCATCAATTCTCACTACCAGAAA
AAGTAACTCACGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAG
TCAGTCGTTATCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATG
AAATGCATTCTTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAAT
GAATCAATATTCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCT
TCACAACTTGTGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTC
TCAAAGACATTTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTC
TATTCCGCAGTTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCG
ATAGCGTCTCAATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGG
ATAGCATCCAACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCC
CGGATATCTATCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAG
CTGCACCCCCGCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCC
ACACACAAGGCATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTT
GTTAC
back to top