CN181615

Overview
NameCN181615
Unique NameCN181615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6197 contig Csv1_Contig6197:38..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_BOVIN (Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.953e-38
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 3
Query:   93 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 608
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 175          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_CHICK (Eukaryotic translation initiation factor 2 subunit 1 OS=Gallus gallus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.466e-37
Identity = 86/166 (51.81%), Postives = 111/166 (66.87%), Query Frame = 3
Query:   93 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSL 566
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP ++L+SL
Sbjct:    2 PALSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-AILDSL 166          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_METJA (Translation initiation factor 2 subunit alpha OS=Methanocaldococcus jannaschii GN=eif2a PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 58/170 (34.12%), Postives = 90/170 (52.94%), Query Frame = 3
Query:  126 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSL--TREVK----EIGPDGQEVTKV 617
            +PE    V+  VK++   GA+V LLEY   EGMI  SE             KVG+     VLRVD+ KG+IDLS +RV+E+  +A  + + + +    ++   AE LG  LEE +  +G+ L  ++G  + AF+ +V +   VL+ L  + E K    E+  +  E+T V
Sbjct:    8 FPEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVAKVLRVDERKGHIDLSLKRVTEQQKRAKVQEWKRFQRASKMLERAAEKLGKSLEEAWEEVGYLLEDEFGELYNAFETMVIEGKEVLDDLEISEEWKNVLYEVAKESIELTNV 177          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_THEGJ (Translation initiation factor 2 subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  126 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSL 566
            YPE    V+  VKNI   GA++ L EY   EG +  SE             K G+   V V+RVD EKG+IDLS +RV+++  +A  + Y +++   ++++  AE +G D E  +  +  PL  +YG  + AF+    +   VL  L
Sbjct:    8 YPEEGEFVVATVKNIHPYGAFLILDEYPGKEGFMHISEVAPTWVKNIRDYVKEGQKVVVKVIRVDPEKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKIGKDFETAWREVWVPLEEEYGEVYAAFEDAAQNGIEVLKGL 154          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_PYRKO (Translation initiation factor 2 subunit alpha OS=Pyrococcus kodakaraensis GN=eif2a PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  126 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSL 566
            YPE    V+  VKNI   GA+++L EY   EG +  SE             K G+     V+RVD EKG+IDLS +RV+++  +A  + Y +++   ++++  AE LG D E  +  +  PL  +YG  + AF+    +   VL  L
Sbjct:    8 YPEEGEFVVATVKNIHPYGAFLTLDEYPGKEGFMHISEVAPTWVKNIRDYLKEGQKIVAKVIRVDPEKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKLGKDFETAWREVWVPLEEEYGEVYAAFEDAAQNGMDVLKGL 154          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_SULTO (Translation initiation factor 2 subunit alpha OS=Sulfolobus tokodaii GN=eif2a PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 49/152 (32.24%), Postives = 80/152 (52.63%), Query Frame = 3
Query:  159 VKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTK 614
            VK I D G+YV+L EY N++  + +SE             K GR   V V+RVDK KG ID+S ++V+E++ +    ++ K + V  I+  V++ +    +E +  + W L  KYG A++A    V + DS+L +       I P  +E+ K
Sbjct:   19 VKQIFDYGSYVTLDEYGNLQAFLPWSEISSRWVKNIRDVIKEGRKIVVKVIRVDKRKGTIDVSLKKVTEDEKRKKMSQWKKIQKVDKILEIVSQKINKTEKEGWEQVAWKLEDKYGDAYDALVKAVKEGDSILKNAGVPEVWIKPLMEEIGK 170          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_THEON (Translation initiation factor 2 subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14
Identity = 47/150 (31.33%), Postives = 75/150 (50.00%), Query Frame = 3
Query:  126 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTRE 575
            YPE    V+  VK+I   GA++ L EY   EG +  SE             K G+     V+RVD  KG+IDLS +RV+++  +A  + Y +++   ++++  AE LG D E  +  +  PL  +YG  + AF+    +   VL  +  E
Sbjct:    8 YPEEGEFVIATVKSIHPYGAFLKLDEYPGKEGFMHISEVASTWVKNIRDYVKEGQKVVAKVIRVDPNKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKLGKDFEMAWQEVWVPLEEEYGEVYAAFEDAAQNGIEVLKGIIPE 157          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_PYRFU (Translation initiation factor 2 subunit alpha OS=Pyrococcus furiosus GN=eif2a PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.928e-13
Identity = 42/134 (31.34%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  126 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFK 527
            YPE    V+  VK + + GA++ L EY   EG +  SE             + G+     V+RVD +KG+IDLS RRV+++  +A  + + +++   ++++  AE LG D EE +  +  PL  ++G  + AF+
Sbjct:    8 YPEEGELVVATVKRVHNYGAFLDLDEYPGKEGFMHISEVASTWVKNIRDYLREGQKVVAKVIRVDPKKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFEEAWREVWVPLENEWGEVYAAFE 141          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_PIG (Eukaryotic translation initiation factor 2 subunit 1 (Fragment) OS=Sus scrofa GN=EIF2S1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   93 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGR 290
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGR 67          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_PYRHO (Translation initiation factor 2 subunit alpha OS=Pyrococcus horikoshii GN=eif2a PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 46/144 (31.94%), Postives = 72/144 (50.00%), Query Frame = 3
Query:  126 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVL 557
            YPE    V+  VK I + GA++ L EY   E  +  SE             K G+     V+RVD  KG+IDLS RRV+++  +A  + + +++   +++R  AE LG D E  +  +  PL  ++G  + AF+    D   VL
Sbjct:    8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLRLAAEKLGKDFEAAWREVWVPLEEEWGEVYAAFEDAAKDGIEVL 151          
The following BLAST results are available for this feature:
BLAST of CN181615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF2A_BOVIN2.953e-3850.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_CHICK1.466e-3751.81Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_METJA1.685e-1734.12Translation initiation factor 2 subunit alpha OS=M... [more]
IF2A_THEGJ3.513e-1533.33Translation initiation factor 2 subunit alpha OS=T... [more]
IF2A_PYRKO3.513e-1533.33Translation initiation factor 2 subunit alpha OS=P... [more]
IF2A_SULTO2.277e-1432.24Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_THEON5.073e-1431.33Translation initiation factor 2 subunit alpha OS=T... [more]
IF2A_PYRFU1.928e-1331.34Translation initiation factor 2 subunit alpha OS=P... [more]
IF2A_PIG3.288e-1353.03Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_PYRHO4.294e-1331.94Translation initiation factor 2 subunit alpha OS=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181615 ID=CN181615; Name=CN181615; organism=Citrus sinensis; type=EST; length=630bp
GCCTAATTCTTGTTCCCACTCCCTTCGAATTTTCCCGAGAAAACGCAAAA
GCTAAAAAGCTTTCCGAGCAACCAATCATGGCAAGCCACTCGCCCAACCT
GGAGTGCCGGATGTACGAGGCGAGGTACCCGGAAGTCGACATGGCCGTGA
TGATCCAAGTGAAGAACATCGCCGACATGGGCGCCTACGTGTCGCTGCTC
GAGTACAACAACATCGAAGGGATGATCCTTTTCTCGGAGCTCTCGCGACG
TCGTATTCGTAGTGTCAGTAGCCTCATTAAAGTCGGCCGCATCGAGCCCG
TCATGGTCCTGCGTGTCGACAAGGAAAAAGGTTACATTGATTTGAGTAAA
AGAAGAGTTAGTGAAGAGGATATTCAAGCCTGTGAGGAGAGGTACAACAA
GAGCAAGCTCGTTCACTCTATCATGCGACACGTGGCTGAGACTTTGGGCA
TCGATTTAGAGGAACTGTATGTCAATATTGGCTGGCCCTTGTACCGGAAA
TATGGTCATGCTTTTGAGGCATTCAAAATCATTGTTACTGATCCTGATTC
TGTTTTGAATTCCCTCACTCGTGAAGTCAAAGAAATTGGCCCTGATGGAC
AGGAGGTAACTAAGGTGGTTCCTGCTGTGA
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