CN181612

Overview
NameCN181612
Unique NameCN181612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3_XENLA (Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  451 PFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            P   +   EQ +    NTGINF+ Y+DIPVE +G N PP + +F ++ +GE +  NI+  +Y +PTPVQ+HAIPI I  RDLMACAQTGSGKTAA
Sbjct:  180 PLAPNDRVEQELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAA 274          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3Y_MOUSE (ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 69/198 (34.85%), Postives = 93/198 (46.97%), Query Frame = 1
Query:  226 TRSTYVPPHLRNKPPTSS--------------EPPASSRESTEPASGPGW----GSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEE----------NTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            ++  Y+PPHLRN+  +                +   SS  S +    P +    GSGSR  F                              +   D+    +P+   E          NTGINF+ Y+DIPVE +G N PP +  F++I++GE +  NI   +Y +PTPVQ+HAIPI    RDLMACAQTGSGKTAA
Sbjct:   35 SKGRYIPPHLRNRETSKGVCDKDSSGWSCSKDKDAYSSFGSRDSRGKPNYFSDRGSGSRGRFDDHGRNDYDGIGGRDRTGFGKFERSGHSRWSDRSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 232          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_PICGU (ATP-dependent RNA helicase DED1 OS=Pichia guilliermondii GN=DED1 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 69/188 (36.70%), Postives = 88/188 (46.81%), Query Frame = 1
Query:  229 RSTYVPPHLRNKPPTSSEPPASSRESTEPASGPGWGSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGA-----EQPVAEEE----------------NTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            RS YVPPHLRN+P   S P   SR     +   G+GSG R DF                              N     VG       +P A  E                ++GINFD Y+DIPVE +G+ VP  ++ F    L   +  NI+  ++ KPTPVQ++++PI   GRDLMACAQTGSGKT
Sbjct:   36 RSQYVPPHLRNRPNGGSTP---SRRGDFGSRSNGFGSGRRGDFNSSGFQFGSGRRGNSGFGGRGGFGGGSGRYNSPKPGVGQWVDGKHEPAAPNERLEKELFGVAEDPSVQSSGINFDNYDDIPVEATGDGVPEPISAFTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKT 220          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3X_MOUSE (ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            EQ +    NTGINF+ Y+DIPVE +G N PP + +F+++++GE +  NI   +Y +PTPVQ+HAIPI    RDLMACAQTGSGKTAA
Sbjct:  147 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 233          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3X_HUMAN (ATP-dependent RNA helicase DDX3X OS=Homo sapiens GN=DDX3X PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            EQ +    NTGINF+ Y+DIPVE +G N PP + +F+++++GE +  NI   +Y +PTPVQ+HAIPI    RDLMACAQTGSGKTAA
Sbjct:  147 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 233          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3L_MOUSE (Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            EQ +    NTGINF+ Y+DIPVE +G N PP + +F+++++GE +  NI   +Y +PTPVQ+HAIPI    RDLMACAQTGSGKTAA
Sbjct:  146 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 232          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_RANLE (Probable ATP-dependent RNA helicase DDX4 OS=Rana lessonae GN=ddx4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.046e-22
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            E  + +   TGINFD Y+DI VE SG +VPPA+ TF E +L ++L  N+ +  YVK TP+Q+H+IPI + GRDLMACAQTGSGKTAA
Sbjct:  253 ESDIFKHYQTGINFDKYDDIVVEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAA 339          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_XENLA (Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis GN=ddx4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.974e-22
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            E  +  +  +GINFD Y++I V+ +G++VPPA+ TF E +L E L  N+ R  YVK TPVQ+H+IPI + GRDLMACAQTGSGKTAA
Sbjct:  241 EDNIFRQYQSGINFDKYDEILVDVTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAA 327          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_LODEL (ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus GN=DED1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.576e-21
Identity = 73/203 (35.96%), Postives = 94/203 (46.31%), Query Frame = 1
Query:  229 RSTYVPPHLRNKPPTSSEPPASSRESTEP-------------------------ASGPGWG-------SGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXER-EVNPFGDDVGAEQPVAEE---ENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            R  YVPPHLRN+  +S +P ++      P                          SGP  G        GSR  F                          +R E+  FG        VAE+   +++GINFD Y+DIPVE SGE VP  +N+F    L E L  NI+  ++ KPTPVQ++++PI   GRDLMACAQTGSGKT
Sbjct:   34 RRQYVPPHLRNR--SSHQPSSNGANGDIPFGGSRRSDYGGGRGGFGFGGGSNGGGSGPSGGYRNGGARGGSRGGFGGGRYQRPTPGVGRWVDGKHEPAPRNDRLELELFG--------VAEDTLFQSSGINFDNYDDIPVEASGEGVPEPINSFTAPPLDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKT 226          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_RAT (Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus GN=Ddx4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            E  +     TGINFD Y+ I VE SG + PPA+ TF E +L + LN NI +  Y K TPVQ+++IPI + GRDLMACAQTGSGKTAA
Sbjct:  240 EDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAA 326          
The following BLAST results are available for this feature:
BLAST of CN181612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
DDX3_XENLA7.242e-2454.74Putative ATP-dependent RNA helicase an3 OS=Xenopus... [more]
DDX3Y_MOUSE2.107e-2334.85ATP-dependent RNA helicase DDX3Y OS=Mus musculus G... [more]
DED1_PICGU2.752e-2336.70ATP-dependent RNA helicase DED1 OS=Pichia guillier... [more]
DDX3X_MOUSE3.594e-2357.47ATP-dependent RNA helicase DDX3X OS=Mus musculus G... [more]
DDX3X_HUMAN3.594e-2357.47ATP-dependent RNA helicase DDX3X OS=Homo sapiens G... [more]
DDX3L_MOUSE3.594e-2357.47Putative ATP-dependent RNA helicase Pl10 OS=Mus mu... [more]
DDX4_RANLE1.046e-2258.62Probable ATP-dependent RNA helicase DDX4 OS=Rana l... [more]
DDX4_XENLA3.974e-2257.47Probable ATP-dependent RNA helicase DDX4 OS=Xenopu... [more]
DED1_LODEL2.576e-2135.96ATP-dependent RNA helicase DED1 OS=Lodderomyces el... [more]
DDX4_RAT4.393e-2157.47Probable ATP-dependent RNA helicase DDX4 OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181612 ID=CN181612; Name=CN181612; organism=Citrus sinensis; type=EST; length=736bp
ATTTGATTTTCATCTGATTTTTCAACGAAGATTTTTGATCTGCTAGCTAA
ATAGTTAGGAAGCAAACGAGAAATTTCGATTGAGAAACGTGGAGCATTGT
GTGTTAATTGTTAAAACAAGGGGAGCTAAAATTTGGGAATTATGAGCACT
TCATGGGCTGATTCAGTGTCTGCATCTGAGAATGCGGCCCCTGCTTCTTC
TAATATCAGTGCCTTACCTCGTCCCACTCGATCCACTTATGTTCCGCCAC
ATCTCCGTAACAAGCCACCAACCTCTTCTGAACCTCCTGCTTCGTCACGA
GAATCTACTGAACCTGCCAGTGGCCCCGGCTGGGGCAGTGGTTCGAGGCC
CGATTTTGGGCGTGGTCAGGGTTACGGCTCTGGTGGTAGAAGTGGCGGTG
GTTGGAATAATAGAAGTGGGGGTTGGGACCGAAGGGAACGTGAAGTGAAC
CCGTTTGGTGATGATGTTGGTGCAGAGCAGCCGGTTGCTGAAGAAGAAAA
CACGGGTATTAATTTTGATGCTTATGAGGATATTCCAGTGGAGACAAGTG
GAGAAAATGTGCCACCGGCAGTTAATACATTTGCAGAAATTGATTTGGGG
GAAGCTTTGAATCTTAATATTAGGAGGTGCAAGTATGTCAAACCGACGCC
TGTTCAGCGTCATGCGATTCCTATATCGATTGGTGGGCGAGATTTAATGG
CCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCT
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