CN181612

Overview
NameCN181612
Unique NameCN181612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_PIG (Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            E  +     TGINFD Y+ I VE SG + PPA+ TF E +L + LN NI +  Y K TPVQ+++IPI + GRDLMACAQTGSGKTAA
Sbjct:  253 EDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAA 339          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_MOUSE (Probable ATP-dependent RNA helicase DDX4 OS=Mus musculus GN=Ddx4 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            E  +     TGINFD Y+ I VE SG + PPA+ TF E +L + LN NI +  Y K TPVQ+++IPI + GRDLMACAQTGSGKTAA
Sbjct:  228 EDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAA 314          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            E  +     TGINFD Y+ I VE SG + PPA+ TF E +L + LN NI +  Y K TPVQ+++IPI + GRDLMACAQTGSGKTAA
Sbjct:  255 EDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAA 341          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 70/196 (35.71%), Postives = 88/196 (44.90%), Query Frame = 1
Query:  220 RPTRSTYVPPHLRNK--PPTSSEP--PASSRESTE----PASGP----------------GWGSGSR--PDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            +P +  YVPPHLRN+  PP +  P  PA+ R S      PA+ P                GWG+  R    F                          +      GD +         + TGINFD Y DIPVE SG+ VP  V  F    +   L  N++  +Y  PTPVQ+++IPI   GRDLMACAQTGSGKT
Sbjct:   24 KPQKPAYVPPHLRNRAAPPAAVPPAAPAAYRPSPTGLPTPATTPPTRHIVPAAVAEDDVGGWGAQPRVRKTFEHGAPPGFGSWKNGQHVVGARNTRMEKEMYGEVGDGL--------HQATGINFDKYADIPVEVSGKGVPEPVTEFTNPPINPVLLENVKYARYATPTPVQKYSIPIVADGRDLMACAQTGSGKT 211          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_BOVIN (Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus GN=DDX4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            E  +     TGINFD Y+ I VE SG + PPA+ TF E +L + LN NI +  Y K TPVQ+++IPI  GGRDLMACAQTGSGKTAA
Sbjct:  257 EDSIFAHYQTGINFDKYDTILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAA 343          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:  493 EENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            +++TGINF+ Y+DIPVE SG+NVP  V TF+   L   L  NI+  +Y  PTPVQ+++IPI +GGRDLMACAQTGSGKT
Sbjct:  167 KQHTGINFEKYDDIPVEASGDNVPEPVLTFSNPPLDNHLISNIQLARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKT 245          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.669e-20
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            E  +     TGI+FD Y+ I VE SG + PPA+ TF E +L + LN NI +  Y K TPVQ+++IPI + GRDLMACAQTGSGKTAA
Sbjct:  256 EDSIFAHYQTGISFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAA 342          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  493 EENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            ++NTGINF  Y+DIPVE SG +VP  VNTF    L + L  NI   +Y  PTPVQ+++IPI + GRDLMACAQTGSGKT
Sbjct:  159 KQNTGINFANYDDIPVEASGHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKT 237          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_ASPOR (ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae GN=ded1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  493 EENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            ++NTGINF  Y+DIPVE SG+NVP  VN F    L + L  NI    Y  PTPVQ+++IPI + GRDLMACAQTGSGKT
Sbjct:  159 KQNTGINFANYDDIPVEASGQNVPEPVNAFTNPPLDDHLIANITLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKT 237          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_PICST (ATP-dependent RNA helicase DED1 OS=Pichia stipitis GN=DED1 PE=3 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-20
Identity = 68/190 (35.79%), Postives = 88/190 (46.32%), Query Frame = 1
Query:  229 RSTYVPPHLRNKPPTSSEP-------------------PASSRESTEPASGPGW----GSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            RS YVPPHLRN+  +S                       A +R++T    G G     G G R  F                          E E+    +D   +       ++GINFD Y+DIPVE SG+ VP  + +F    L E L  NI   ++ KPTPVQ++++PI  GGRDLMACAQTGSGKT
Sbjct:   38 RSQYVPPHLRNRNTSSGSGFGGNGGGRGRGSFGGSNYNNAGNRDNTI-FGGSGRSRDRGFGGRGGFRSNQSRPGVGRWVDGKHEPSARNERIELELFGTAEDTSFQ-------SSGINFDNYDDIPVEASGDGVPDPITSFTAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKT 219          
The following BLAST results are available for this feature:
BLAST of CN181612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
DDX4_PIG4.393e-2157.47Probable ATP-dependent RNA helicase DDX4 OS=Sus sc... [more]
DDX4_MOUSE4.393e-2157.47Probable ATP-dependent RNA helicase DDX4 OS=Mus mu... [more]
DDX4_HUMAN4.393e-2157.47Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
DED1_CRYNE5.738e-2135.71ATP-dependent RNA helicase ded1 OS=Cryptococcus ne... [more]
DDX4_BOVIN5.738e-2158.62Probable ATP-dependent RNA helicase DDX4 OS=Bos ta... [more]
DED1_NEUCR1.278e-2060.76ATP-dependent RNA helicase ded-1 OS=Neurospora cra... [more]
DDX4_MACFA1.669e-2056.32Probable ATP-dependent RNA helicase DDX4 OS=Macaca... [more]
DED1_EMENI2.848e-2060.76ATP-dependent RNA helicase ded1 OS=Emericella nidu... [more]
DED1_ASPOR2.848e-2060.76ATP-dependent RNA helicase ded1 OS=Aspergillus ory... [more]
DED1_PICST3.719e-2035.79ATP-dependent RNA helicase DED1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181612 ID=CN181612; Name=CN181612; organism=Citrus sinensis; type=EST; length=736bp
ATTTGATTTTCATCTGATTTTTCAACGAAGATTTTTGATCTGCTAGCTAA
ATAGTTAGGAAGCAAACGAGAAATTTCGATTGAGAAACGTGGAGCATTGT
GTGTTAATTGTTAAAACAAGGGGAGCTAAAATTTGGGAATTATGAGCACT
TCATGGGCTGATTCAGTGTCTGCATCTGAGAATGCGGCCCCTGCTTCTTC
TAATATCAGTGCCTTACCTCGTCCCACTCGATCCACTTATGTTCCGCCAC
ATCTCCGTAACAAGCCACCAACCTCTTCTGAACCTCCTGCTTCGTCACGA
GAATCTACTGAACCTGCCAGTGGCCCCGGCTGGGGCAGTGGTTCGAGGCC
CGATTTTGGGCGTGGTCAGGGTTACGGCTCTGGTGGTAGAAGTGGCGGTG
GTTGGAATAATAGAAGTGGGGGTTGGGACCGAAGGGAACGTGAAGTGAAC
CCGTTTGGTGATGATGTTGGTGCAGAGCAGCCGGTTGCTGAAGAAGAAAA
CACGGGTATTAATTTTGATGCTTATGAGGATATTCCAGTGGAGACAAGTG
GAGAAAATGTGCCACCGGCAGTTAATACATTTGCAGAAATTGATTTGGGG
GAAGCTTTGAATCTTAATATTAGGAGGTGCAAGTATGTCAAACCGACGCC
TGTTCAGCGTCATGCGATTCCTATATCGATTGGTGGGCGAGATTTAATGG
CCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCT
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