CN181612
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_PIG (Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21 Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1 Query: 475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 E + TGINFD Y+ I VE SG + PPA+ TF E +L + LN NI + Y K TPVQ+++IPI + GRDLMACAQTGSGKTAA Sbjct: 253 EDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAA 339
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_MOUSE (Probable ATP-dependent RNA helicase DDX4 OS=Mus musculus GN=Ddx4 PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21 Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1 Query: 475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 E + TGINFD Y+ I VE SG + PPA+ TF E +L + LN NI + Y K TPVQ+++IPI + GRDLMACAQTGSGKTAA Sbjct: 228 EDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAA 314
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21 Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1 Query: 475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 E + TGINFD Y+ I VE SG + PPA+ TF E +L + LN NI + Y K TPVQ+++IPI + GRDLMACAQTGSGKTAA Sbjct: 255 EDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAA 341
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21 Identity = 70/196 (35.71%), Postives = 88/196 (44.90%), Query Frame = 1 Query: 220 RPTRSTYVPPHLRNK--PPTSSEP--PASSRESTE----PASGP----------------GWGSGSR--PDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729 +P + YVPPHLRN+ PP + P PA+ R S PA+ P GWG+ R F + GD + + TGINFD Y DIPVE SG+ VP V F + L N++ +Y PTPVQ+++IPI GRDLMACAQTGSGKT Sbjct: 24 KPQKPAYVPPHLRNRAAPPAAVPPAAPAAYRPSPTGLPTPATTPPTRHIVPAAVAEDDVGGWGAQPRVRKTFEHGAPPGFGSWKNGQHVVGARNTRMEKEMYGEVGDGL--------HQATGINFDKYADIPVEVSGKGVPEPVTEFTNPPINPVLLENVKYARYATPTPVQKYSIPIVADGRDLMACAQTGSGKT 211
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_BOVIN (Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus GN=DDX4 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21 Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 1 Query: 475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 E + TGINFD Y+ I VE SG + PPA+ TF E +L + LN NI + Y K TPVQ+++IPI GGRDLMACAQTGSGKTAA Sbjct: 257 EDSIFAHYQTGINFDKYDTILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAA 343
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20 Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1 Query: 493 EENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729 +++TGINF+ Y+DIPVE SG+NVP V TF+ L L NI+ +Y PTPVQ+++IPI +GGRDLMACAQTGSGKT Sbjct: 167 KQHTGINFEKYDDIPVEASGDNVPEPVLTFSNPPLDNHLISNIQLARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKT 245
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.669e-20 Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1 Query: 475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 E + TGI+FD Y+ I VE SG + PPA+ TF E +L + LN NI + Y K TPVQ+++IPI + GRDLMACAQTGSGKTAA Sbjct: 256 EDSIFAHYQTGISFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAA 342
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20 Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1 Query: 493 EENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729 ++NTGINF Y+DIPVE SG +VP VNTF L + L NI +Y PTPVQ+++IPI + GRDLMACAQTGSGKT Sbjct: 159 KQNTGINFANYDDIPVEASGHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKT 237
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_ASPOR (ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae GN=ded1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20 Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 1 Query: 493 EENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729 ++NTGINF Y+DIPVE SG+NVP VN F L + L NI Y PTPVQ+++IPI + GRDLMACAQTGSGKT Sbjct: 159 KQNTGINFANYDDIPVEASGQNVPEPVNAFTNPPLDDHLIANITLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKT 237
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_PICST (ATP-dependent RNA helicase DED1 OS=Pichia stipitis GN=DED1 PE=3 SV=3) HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-20 Identity = 68/190 (35.79%), Postives = 88/190 (46.32%), Query Frame = 1 Query: 229 RSTYVPPHLRNKPPTSSEP-------------------PASSRESTEPASGPGW----GSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729 RS YVPPHLRN+ +S A +R++T G G G G R F E E+ +D + ++GINFD Y+DIPVE SG+ VP + +F L E L NI ++ KPTPVQ++++PI GGRDLMACAQTGSGKT Sbjct: 38 RSQYVPPHLRNRNTSSGSGFGGNGGGRGRGSFGGSNYNNAGNRDNTI-FGGSGRSRDRGFGGRGGFRSNQSRPGVGRWVDGKHEPSARNERIELELFGTAEDTSFQ-------SSGINFDNYDDIPVEASGDGVPDPITSFTAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKT 219 The following BLAST results are available for this feature:
BLAST of CN181612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181612 ID=CN181612; Name=CN181612; organism=Citrus sinensis; type=EST; length=736bpback to top |