CN181612

Overview
NameCN181612
Unique NameCN181612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_BOTFB (ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) GN=ded1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 52/98 (53.06%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  436 EREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            ERE+    DD   +Q       TGINF+ Y+DIPVE SG++VP  V  F    L + L  NI    Y  PTPVQ+++IPI +GGRDLMACAQTGSGKT
Sbjct:  147 ERELFGIADDPTKQQ-------TGINFEKYDDIPVEASGQDVPEPVLKFTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKT 237          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_ASPFU (ATP-dependent RNA helicase ded1 OS=Aspergillus fumigatus GN=ded1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  493 EENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            +++TGINF  Y+DIPVE SG +VP  VN F    L + L  NI+  +Y  PTPVQ+++IPI + GRDLMACAQTGSGKT
Sbjct:  161 KQSTGINFANYDDIPVEASGHDVPEPVNAFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKT 239          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_CANAL (ATP-dependent RNA helicase DED1 OS=Candida albicans GN=DED1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.411e-19
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  496 ENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            +++GINFD Y+DIPVE SG+ VP  + +F    L E L  NI+  ++ KPTPVQ++++PI   GRDLMACAQTGSGKT
Sbjct:  160 QSSGINFDNYDDIPVEASGDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKT 237          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_ASHGO (ATP-dependent RNA helicase DED1 OS=Ashbya gossypii GN=DED1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.411e-19
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  496 ENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            +++GINFD Y+DIPV+ SGE+VP  +  F    L E L  NI+  ++ KPTPVQ++++PI   GRDLMACAQTGSGKT
Sbjct:  120 QSSGINFDNYDDIPVDASGEDVPDPITEFTSPPLDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKT 197          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3_DICDI (Probable ATP-dependent RNA helicase ddx3 OS=Dictyostelium discoideum GN=ddx3 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.411e-19
Identity = 48/83 (57.83%), Postives = 65/83 (78.31%), Query Frame = 1
Query:  493 EENTGINFDAYED--IPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            ++N GI+F+AY+D  I +ETS E++   +N+FA++DLG+ L  NI+  KY KPTPVQ+ A+PI +  RDLMACAQTGSGKTAA
Sbjct:  219 DDNIGIDFNAYDDDDISIETS-EHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAA 300          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_AJECN (ATP-dependent RNA helicase DED1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DED1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.149e-19
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  436 EREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            ERE+  FG+   A+ P   +++TGINF  Y+ IPVE SG +VP ++  F    L E L  NI   +Y  PTPVQ+++IPI +GGRDLMACAQTGSGKT
Sbjct:  164 EREL--FGE---ADDPT--KQHTGINFSNYDSIPVEASGHDVPESITAFTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKT 254          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DBP1_CANGA (ATP-dependent RNA helicase DBP1 OS=Candida glabrata GN=DBP1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.149e-19
Identity = 65/182 (35.71%), Postives = 82/182 (45.05%), Query Frame = 1
Query:  238 YVPPHLRNKPPTSSEPPASSRESTEPASGPGWGS--------------GSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPV----AEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            YVPPH+R     S E  A+   S    SG G+ S              GSRP                              +  P+  +   E  +     +   +GINFD Y+DIPVE SG+NVP A+  F    L E L  N+    + KPTPVQ+++IPI    RDLMACAQTGSGKT
Sbjct:    8 YVPPHIRRGGGNSHESAAADGLSGSRYSGNGFFSSPNRGNHKSSGGFFGSRPFNDRRTGQGSRASGSGGFGGSGGRYGWVNGKHVPYPKNPRLEMELFGNATDHVTSGINFDNYDDIPVEASGDNVPEAITEFKSPPLDELLLENVELANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKT 189          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum GN=DED1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  493 EENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            ++ TGINF+ Y+DIPVE SG+ VP  V  F    L + L  NI    Y  PTPVQ+++IPI +GGRDLMACAQTGSGKT
Sbjct:  174 KQQTGINFEKYDDIPVEASGQGVPEPVTRFTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKT 252          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_DEBHA (ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii GN=DED1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            E+P  +  ++GINFD Y+DIPVE SGE VP  +  F    L   L  N++  ++ KPTPVQ++++PI   GRDLMACAQTGSGKT
Sbjct:  125 EEPTTQ--SSGINFDNYDDIPVEASGEGVPEPITAFTAPPLDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKT 207          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DED1_YEAST (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae GN=DED1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 63/174 (36.21%), Postives = 84/174 (48.28%), Query Frame = 1
Query:  238 YVPPHLRNKPPTSSEPPASSRESTEPASGPGWGSGS------RPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVG-AEQPVAEEEN---TGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 729
            YVPPHLR KP  S+   +S+  +       G G GS      R  +                          +    P  +    A   V E+ N   +GINFD Y+DIPV+ SG++VP  +  F    L   L  NI+  ++ KPTPVQ++++PI   GRDLMACAQTGSGKT
Sbjct:   21 YVPPHLRGKP-RSARNNSSNYNNNNGGYNGGRGGGSFFSNNRRGGYGNGGFFGGNNGGSRSNGRSGGRWIDGKHVPAPRNEKAEIAIFGVPEDPNFQSSGINFDNYDDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKT 193          
The following BLAST results are available for this feature:
BLAST of CN181612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
DED1_BOTFB1.846e-1953.06ATP-dependent RNA helicase ded1 OS=Botryotinia fuc... [more]
DED1_ASPFU1.846e-1958.23ATP-dependent RNA helicase ded1 OS=Aspergillus fum... [more]
DED1_CANAL2.411e-1956.41ATP-dependent RNA helicase DED1 OS=Candida albican... [more]
DED1_ASHGO2.411e-1956.41ATP-dependent RNA helicase DED1 OS=Ashbya gossypii... [more]
DDX3_DICDI2.411e-1957.83Probable ATP-dependent RNA helicase ddx3 OS=Dictyo... [more]
DED1_AJECN3.149e-1953.06ATP-dependent RNA helicase DED1 OS=Ajellomyces cap... [more]
DBP1_CANGA3.149e-1935.71ATP-dependent RNA helicase DBP1 OS=Candida glabrat... [more]
DED1_PHANO5.371e-1958.23ATP-dependent RNA helicase DED1 OS=Phaeosphaeria n... [more]
DED1_DEBHA5.371e-1952.94ATP-dependent RNA helicase DED1 OS=Debaryomyces ha... [more]
DED1_YEAST1.563e-1836.21ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181612 ID=CN181612; Name=CN181612; organism=Citrus sinensis; type=EST; length=736bp
ATTTGATTTTCATCTGATTTTTCAACGAAGATTTTTGATCTGCTAGCTAA
ATAGTTAGGAAGCAAACGAGAAATTTCGATTGAGAAACGTGGAGCATTGT
GTGTTAATTGTTAAAACAAGGGGAGCTAAAATTTGGGAATTATGAGCACT
TCATGGGCTGATTCAGTGTCTGCATCTGAGAATGCGGCCCCTGCTTCTTC
TAATATCAGTGCCTTACCTCGTCCCACTCGATCCACTTATGTTCCGCCAC
ATCTCCGTAACAAGCCACCAACCTCTTCTGAACCTCCTGCTTCGTCACGA
GAATCTACTGAACCTGCCAGTGGCCCCGGCTGGGGCAGTGGTTCGAGGCC
CGATTTTGGGCGTGGTCAGGGTTACGGCTCTGGTGGTAGAAGTGGCGGTG
GTTGGAATAATAGAAGTGGGGGTTGGGACCGAAGGGAACGTGAAGTGAAC
CCGTTTGGTGATGATGTTGGTGCAGAGCAGCCGGTTGCTGAAGAAGAAAA
CACGGGTATTAATTTTGATGCTTATGAGGATATTCCAGTGGAGACAAGTG
GAGAAAATGTGCCACCGGCAGTTAATACATTTGCAGAAATTGATTTGGGG
GAAGCTTTGAATCTTAATATTAGGAGGTGCAAGTATGTCAAACCGACGCC
TGTTCAGCGTCATGCGATTCCTATATCGATTGGTGGGCGAGATTTAATGG
CCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCT
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