CN181611

Overview
NameCN181611
Unique NameCN181611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7277 contig Csv1_Contig7277:86..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.550e-30
Identity = 78/194 (40.21%), Postives = 109/194 (56.19%), Query Frame = 3
Query:   18 VNDFCVA--DLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILG 581
            + DFCVA  DLK      G  C  P  V A DF FSGL + GNT + + + VT   V Q P +N +G+SL R+D A  G  P HTHP  SEIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +N  +  +L+ +   LD + VK L+   G
Sbjct:   28 LQDFCVAIDDLK-GVFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKFG 220          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.247e-29
Identity = 74/190 (38.95%), Postives = 112/190 (58.95%), Query Frame = 3
Query:   18 VNDFCVADLKLSD--SPA--GYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 569
            + DFCVA  +     SPA  G+PC P + V +DDF F+GL  AG+T +   A++ P  V  FPA+N LG+++ R+DLA GGV P+H+HP A+E++ V+ G +  GF+ S+A   Y K + +G+    P+GL+HFQ N G   A     FNS  PG+     ALF  +  +   ++ ++  +D   +K LK
Sbjct:   40 IQDFCVAVPRAGGEASPAYPGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFV-STAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLLK 228          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.629e-29
Identity = 78/194 (40.21%), Postives = 108/194 (55.67%), Query Frame = 3
Query:   18 VNDFCVA--DLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILG 581
            + DFCVA  DLK      G  C  P  V A DF FSGL V GNT + + + VT   V Q P +N +G+SL R+D A  G  P HTHP  SEIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQ+N G   A+ F   +S N G+      +F +N  +  +L+ +   LD   VK L+   G
Sbjct:   28 LQDFCVAIDDLK-GVFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDANVVKELQAKFG 220          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.629e-29
Identity = 75/190 (39.47%), Postives = 106/190 (55.79%), Query Frame = 3
Query:   18 VNDFCVA--DLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 569
            + DFCVA  DLK      G  C  P    A+DF +SGL  AG T + + + VT   V Q P +N LG+SL R+D A  G  P HTHP A+EIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +   ++  ++ Q   LD   VK L+
Sbjct:   28 LQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLE 217          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 70/175 (40.00%), Postives = 98/175 (56.00%), Query Frame = 3
Query:   18 VNDFCVADLKLSDS--PAGYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLV 524
            + DFCV   K +D     G  C  P  V  DDF+F GL +  NT + +  A T    A  P +N LG+S+ARLD A  G+ P HTHP A+E+ +V+ G    GF++S+     N ++ K L KGD+ +FPQGL+HFQ+N G    +G    +S NPG+     A+F     SQL+
Sbjct:   28 LQDFCVGVNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFGPEHLSQLM 202          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = 3
Query:   18 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG-ADGALGFVSFNSPNPGLQITDFALF 497
            + D CVAD        G+ C P + +TA DF F+G+G      + + +AVT A V +   +N LG+SLAR+D A GG+ P HTHP A+E++ V+ G +  GFI ++AN ++ KT+KKG++ +FP+GL+H+Q N+  A  A    +FNS  PG Q     LF
Sbjct:   27 LQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFI-TTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLF 186          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.190e-29
Identity = 74/190 (38.95%), Postives = 107/190 (56.32%), Query Frame = 3
Query:   18 VNDFCVA--DLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 569
            + DFCVA  DLK      G  C  P    A+DF FSGL  AG+T + + + VT   V Q P +N +G+SL R+D A  G  P HTHP A+EIL+++ G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +   ++  ++ Q   LD   VK L+
Sbjct:   28 LQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNIVKDLE 217          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.056e-28
Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   18 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFA 500
            + D CVAD        G+PC     +T  DF F+G+       S + +AVT A V + P +N L +SLAR+D A GG+ P HTHP A+E++ V+ G +  GFI ++AN ++ KT+K G++ +FP+GL+HFQ N+G   A    +FNS  PG       LFA
Sbjct:   28 LQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFI-TTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFA 187          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.352e-28
Identity = 72/167 (43.11%), Postives = 99/167 (59.28%), Query Frame = 3
Query:   18 VNDFCVADLK-LSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 506
            + DFCVADL   + S  G+PC P +    DDF+FS  L  AGNT +   +AVT   VA++P  N LG+S+ R+D A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N
Sbjct:   29 LQDFCVADLDGKAVSVNGHPCKPMSEA-GDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSN 194          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28
Identity = 59/136 (43.38%), Postives = 89/136 (65.44%), Query Frame = 3
Query:   66 GYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 473
            GYPC  P  +TA DF  + L  AG+T + + + VT     +FP +N LGLS++R DL + G +P H+HP +SE+L VV G + AGF+ ++ N ++   L+KGD+ +FP+GLLHF ++ G + A  F  +NS NPG+
Sbjct:   41 GYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTN-NKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGV 175          
The following BLAST results are available for this feature:
BLAST of CN181611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL118_ARATH9.550e-3040.21Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL37_ORYSJ1.247e-2938.95Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL116_ARATH1.629e-2940.21Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL114_ARATH3.629e-2939.47Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GLP1_MESCR4.739e-2940.00Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL24_ARATH4.739e-2941.61Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL113_ARATH6.190e-2938.95Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL22_ARATH1.056e-2840.99Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
OXO2_HORVU2.352e-2843.11Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL34_ARATH4.012e-2843.38Germin-like protein subfamily 3 member 4 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181611 ID=CN181611; Name=CN181611; organism=Citrus sinensis; type=EST; length=666bp
GAGGCTCCAATGCTATGGTTAACGACTTCTGCGTCGCTGACCTAAAGCTG
TCGGATAGTCCCGCCGGCTATCCTTGCGTGCCCCCTGCTATGGTTACCGC
TGACGACTTCGTATTTTCGGGCCTCGGCGTGGCCGGAAACACCATGAGTA
TTATCAACGCGGCAGTGACACCTGCATTTGTAGCTCAATTTCCGGCCGTG
AATGGCCTCGGACTCTCCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGT
AATCCCAATGCACACTCATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGC
ATGGCTGCATAACTGCCGGGTTCATTTCCTCTTCAGCTAACACTGTTTAC
GTAAAGACGCTTAAGAAGGGAGATATCATGATCTTTCCACAAGGGTTGTT
GCATTTTCAAGTAAATTCCGGCGCGGACGGAGCCCTCGGTTTTGTTAGCT
TCAACAGCCCGAATCCTGGACTCCAAATCACCGATTTCGCCTTATTTGCC
AACAACTTGTCTTCCCAATTGGTGGAGCAGACCACTTTCCTTGACGATGC
TACGGTGAAGAGGCTCAAGGGTATCCTTGGTGGCACCGGCTAAGCTTATT
AGTTACCACATTCTTCATTTGTAGTTTTGAGTTCTTAATTTCCATTTAGT
TGCTAATGTATTTGAT
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