CN181611

Overview
NameCN181611
Unique NameCN181611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7277 contig Csv1_Contig7277:86..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.278e-23
Identity = 61/168 (36.31%), Postives = 92/168 (54.76%), Query Frame = 3
Query:   84 PAMVTADDFVFSGLGVAGNTMSIINA---AVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGIL 578
            P  +T D F F+G     NT S        VT A +A+FPA+NG  +S A L      V P HTHP ++E+LLVV G ++ GFI ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S  PG+      +F   +   ++ ++   D  T+ +LK  L
Sbjct:   42 PMNITGDFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGTGIDDAVLAKSFKTDVPTILKLKANL 208          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.975e-23
Identity = 68/198 (34.34%), Postives = 104/198 (52.53%), Query Frame = 3
Query:   24 DFCVADLKLSDSPA-----GYPCVPPAMVTADDFVFSGLGVAGN---TMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALFAN--NLSSQLVEQTTFLDDATVKRLKGILGG 584
            D+CVAD   + +       G  C+ PA+  AD F  S L  A N   T+   NA +T    A  P  N  GL++AR+DLA GG+ P H+HP ASE  LV+ G +  GF  +S   +Y + L+ G+  +FP+ ++HF  N   A  A+     NS +PG Q+  F+ F     L  +++++   +    V+R++  LGG
Sbjct:   29 DYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYR-LYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQKHLGG 224          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.929e-22
Identity = 64/170 (37.65%), Postives = 90/170 (52.94%), Query Frame = 3
Query:   18 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGL--GVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN 506
            + DFCVAD        G PC     V+ DDF  +         T S   + VT   V +   +N L +S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FPQGL+HFQ N   D  A+   + +S NPG      A+F ++
Sbjct:   28 LQDFCVADKHSPVRVNGLPCKDAKDVSVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLSISMARIDYAPKGQNPPHTHPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSH 197          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.290e-22
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 3
Query:   66 GYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFA 500
            G+ C  P+ + A DF    L  AG+  +++ ++       +FP +N LG+S+AR D+A  G +  H+HP ASE++ V  G + AGF  +    ++ KTL +GD+ IFP+GL+HF +N G   A  F   NS NPG+     A+FA
Sbjct:   46 GFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGK-LFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFA 189          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.297e-22
Identity = 51/133 (38.35%), Postives = 82/133 (61.65%), Query Frame = 3
Query:   24 DFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 422
            DFCVADL+ + + +GYPC   + VT++DF +SGL    NT +    A  PA +  FP +N LG+S+  + +A GG    H+HP  +E  +V+ G +  GF++++  T+Y K +  GD+ + P GL+H++ N G
Sbjct:   42 DFCVADLQATPTNSGYPC--KSQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTN-YTLYSKVIGPGDMFVIPPGLIHYEGNVG 171          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.132e-21
Identity = 57/164 (34.76%), Postives = 92/164 (56.10%), Query Frame = 3
Query:   93 VTADDFVFSGL-GVAGNTMSI----INAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLK 569
            +T D F F+G        MS+     N  VT A +A+FPA+NG  +S A L      + P HTHP ++E+LL+V G ++ GF+ ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S   GL      +F  N+   ++ ++   D  T+++LK
Sbjct:   43 ITGDFFTFTGFRNPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTNIDDAVLAKSFKTDVPTIQKLK 205          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.358e-20
Identity = 59/167 (35.33%), Postives = 84/167 (50.30%), Query Frame = 3
Query:   18 VNDFCVADLKLSDSPA---GYPCVPPAMVTADDFVFSGLGVAGNTMS---IINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALF 497
            + D+CV+    S       G  C  P   +  DF  S L   GNT +   +IN  VT    A  P +N +GL++ARLD    GV+P H HP ASE+ + + G +  GF+ +S   V+ + L  G+  +FP+GL+HF  N      AL     +S NPG QI   + F
Sbjct:   23 LQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTT--ANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGR-VFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSF 186          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.000e-11
Identity = 42/131 (32.06%), Postives = 62/131 (47.33%), Query Frame = 3
Query:  105 DFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 497
            DF  S LGV   T               FPAV G  +++    +   G+   HTHP A+EI  +  G   AGF   +       TL+ G   +FPQG +HF++N   + A+   +FN+ +PG+Q T  + F
Sbjct:   75 DFKNSKLGVTQGT----GGKTVATSRTNFPAVIGHNVAMTVGFIEACGINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGVQTTASSFF 201          
BLAST of CN181611 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = 3
Query:  105 DFVFSGLGVAGNTMSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 497
            DF  S LGV   T S     V  +    FPAV G  +++    +   G+   HTHP A+EI  +  G   AGF   +  T     L++G   +FPQG +HF++N   + A+   +FN+ +PG+Q T  + F
Sbjct:   62 DFKNSKLGV---TQSAGGKTVATSRT-DFPAVIGHNIAMTVGFIEACGINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSFF 188          
The following BLAST results are available for this feature:
BLAST of CN181611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL92_ORYSJ2.278e-2336.31Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL31_ORYSJ2.975e-2334.34Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL124_ORYSJ1.929e-2237.65Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
GL111_ORYSJ3.290e-2237.93Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GLT3_ARATH4.297e-2238.35Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL93_ORYSJ2.132e-2134.76Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL11_ARATH2.358e-2035.33Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
SR1A_PHYPO2.000e-1132.06Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]
SR1B_PHYPO4.457e-1133.59Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181611 ID=CN181611; Name=CN181611; organism=Citrus sinensis; type=EST; length=666bp
GAGGCTCCAATGCTATGGTTAACGACTTCTGCGTCGCTGACCTAAAGCTG
TCGGATAGTCCCGCCGGCTATCCTTGCGTGCCCCCTGCTATGGTTACCGC
TGACGACTTCGTATTTTCGGGCCTCGGCGTGGCCGGAAACACCATGAGTA
TTATCAACGCGGCAGTGACACCTGCATTTGTAGCTCAATTTCCGGCCGTG
AATGGCCTCGGACTCTCCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGT
AATCCCAATGCACACTCATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGC
ATGGCTGCATAACTGCCGGGTTCATTTCCTCTTCAGCTAACACTGTTTAC
GTAAAGACGCTTAAGAAGGGAGATATCATGATCTTTCCACAAGGGTTGTT
GCATTTTCAAGTAAATTCCGGCGCGGACGGAGCCCTCGGTTTTGTTAGCT
TCAACAGCCCGAATCCTGGACTCCAAATCACCGATTTCGCCTTATTTGCC
AACAACTTGTCTTCCCAATTGGTGGAGCAGACCACTTTCCTTGACGATGC
TACGGTGAAGAGGCTCAAGGGTATCCTTGGTGGCACCGGCTAAGCTTATT
AGTTACCACATTCTTCATTTGTAGTTTTGAGTTCTTAATTTCCATTTAGT
TGCTAATGTATTTGAT
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