CN181609

Overview
NameCN181609
Unique NameCN181609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 7.827e-91
Identity = 136/158 (86.08%), Postives = 145/158 (91.77%), Query Frame = 1 
Query:  103 GKAVNLAPSGNELSNGGRISMRKTGSK--SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            GKAV L P+ +E+   GRI+MRKT  K  +V S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMG+
Sbjct:   15 GKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGA 172

HSP 2 Score: 65.855 bits (159), Expect = 7.827e-91
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLG
Sbjct:  171 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 200
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 7.829e-91
Identity = 138/156 (88.46%), Postives = 145/156 (92.95%), Query Frame = 1 
Query:  103 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMG+
Sbjct:   16 GKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGA 168

HSP 2 Score: 67.0106 bits (162), Expect = 7.829e-91
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEVTDP+YPGGSFDPLG
Sbjct:  167 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 196
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.021e-90
Identity = 136/160 (85.00%), Postives = 149/160 (93.12%), Query Frame = 1 
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV L+PS +E++  G+++MRKT SK+  VSS SPWYGP+RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFS+GGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172

HSP 2 Score: 62.3882 bits (150), Expect = 1.021e-90
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AG PLGEV DPLYPGGSFDPLG
Sbjct:  171 GAVEGYRVAGEPLGEVVDPLYPGGSFDPLG 200
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.738e-90
Identity = 137/160 (85.62%), Postives = 149/160 (93.12%), Query Frame = 1 
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAVN+ PS ++++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 171

HSP 2 Score: 65.0846 bits (157), Expect = 1.738e-90
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLG
Sbjct:  170 GAVEGYRVAGGPLGEVIDPLYPGGSFDPLG 199
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 3.858e-90
Identity = 135/160 (84.38%), Postives = 147/160 (91.88%), Query Frame = 1 
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GK V L+PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMG+
Sbjct:   13 FAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGA 172

HSP 2 Score: 62.7734 bits (151), Expect = 3.858e-90
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLG V DPLYPGGSFDPLG
Sbjct:  171 GAVEGYRVAGGPLGVVVDPLYPGGSFDPLG 200
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 6.564e-90
Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 1 
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV L+ S +E++  G+++MRKT +K+   SS SPWYGPDRVKYLGPFSGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172

HSP 2 Score: 65.0846 bits (157), Expect = 6.564e-90
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLG
Sbjct:  171 GAVEGYRVAGGPLGEVIDPLYPGGSFDPLG 200
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 3.235e-89
Identity = 134/160 (83.75%), Postives = 147/160 (91.88%), Query Frame = 1 
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAVN+ PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG+QIF EGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 171

HSP 2 Score: 65.0846 bits (157), Expect = 3.235e-89
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLG
Sbjct:  170 GAVEGYRVAGGPLGEVIDPLYPGGSFDPLG 199
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 6.022e-88
Identity = 134/156 (85.90%), Postives = 142/156 (91.03%), Query Frame = 1 
Query:  103 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            GKAV +APS +EL   GR+SMRKT    VS  SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSIL+IWA QV+LMG+
Sbjct:   15 GKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGA 169

HSP 2 Score: 65.0846 bits (157), Expect = 6.022e-88
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGE+ DPLYPGGSFDPLG
Sbjct:  168 GAVEGYRVAGGPLGEIVDPLYPGGSFDPLG 197
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 7.855e-88
Identity = 135/161 (83.85%), Postives = 143/161 (88.82%), Query Frame = 1 
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAVN+  S        R++MRKT +K+    +SGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 170

HSP 2 Score: 65.855 bits (159), Expect = 7.855e-88
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLG
Sbjct:  169 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 198
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 6.586e-87
Identity = 136/161 (84.47%), Postives = 143/161 (88.82%), Query Frame = 1 
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAVN+  S   L    R++MRKT +K+    SSGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 170

HSP 2 Score: 63.929 bits (154), Expect = 6.586e-87
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GA+EGYR+AGGPLGEV DPLYPGG+FDPLG
Sbjct:  169 GAIEGYRVAGGPLGEVVDPLYPGGTFDPLG 198
The following BLAST results are available for this feature:
BLAST of CN181609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2A_SPIOL7.827e-9186.08Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_SOYBN7.829e-9188.46Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_NICPL1.021e-9085.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB24_PETSP1.738e-9085.63Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PETSP3.858e-9084.38Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_PETSP6.564e-9083.75Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PETSP3.235e-8983.75Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_APIGR6.022e-8885.90Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_MAIZE7.855e-8883.85Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE6.586e-8784.47Chlorophyll a-b binding protein M9, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181609 ID=CN181609; Name=CN181609; organism=Citrus sinensis; type=EST; length=655bp
GAGGCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCA
ATTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCG
TCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGT
GGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAG
CCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCG
AGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGAC
ACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACT
CGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCT
TCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGG
TTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGG
GAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCC
AGGTGGTCTTGATGGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCC
GCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCAT
TGGGT
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