CN181609

Overview
NameCN181609
Unique NameCN181609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.590e-87
Identity = 130/140 (92.86%), Postives = 135/140 (96.43%), Query Frame = 1
Query:  151 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            GR+SMRKT SK+VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN SLIHAQSILAIWA QV+LMG+
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGA 150          

HSP 2 Score: 64.6994 bits (156), Expect = 6.590e-87
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPL 652
            GAVEGYRIAGGPLGEVTDP+YPGGSFDPL
Sbjct:  149 GAVEGYRIAGGPLGEVTDPIYPGGSFDPL 177          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 8.591e-87
Identity = 133/158 (84.18%), Postives = 144/158 (91.14%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV L+P  +E+   GR++MRKT   +  SGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMG+
Sbjct:   13 FAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 170          

HSP 2 Score: 55.0694 bits (131), Expect = 8.591e-87
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 2
Query:  566 GAVEGYRIAG-GPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AG GPLGE  D LYPGGSFDPLG
Sbjct:  169 GAVEGYRVAGEGPLGEAEDLLYPGGSFDPLG 199          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 3.245e-86
Identity = 130/142 (91.55%), Postives = 135/142 (95.07%), Query Frame = 1
Query:  151 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            GRI+MRKT  K    +SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMG+
Sbjct:   26 GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 167          

HSP 2 Score: 65.855 bits (159), Expect = 3.245e-86
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLG
Sbjct:  166 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 195          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 4.233e-86
Identity = 131/158 (82.91%), Postives = 138/158 (87.34%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV    S +E+    R+SMRKT +     GSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGA 169          

HSP 2 Score: 65.4698 bits (158), Expect = 4.233e-86
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLG
Sbjct:  168 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 197          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 4.233e-86
Identity = 132/160 (82.50%), Postives = 142/160 (88.75%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV   PS + L    R++MRKT +K+  VSS SPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAIWACQVVLMG+
Sbjct:   13 FAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGA 171          

HSP 2 Score: 65.4698 bits (158), Expect = 4.233e-86
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGE+ DPLYPGGSFDPLG
Sbjct:  170 GAVEGYRIAGGPLGEIVDPLYPGGSFDPLG 199          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.225e-85
Identity = 131/166 (78.92%), Postives = 142/166 (85.54%), Query Frame = 1
Query:  103 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMG+
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGA 179          

HSP 2 Score: 67.0106 bits (162), Expect = 1.225e-85
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEVTDP+YPGGSFDPLG
Sbjct:  178 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 207          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 3.548e-85
Identity = 131/158 (82.91%), Postives = 139/158 (87.97%), Query Frame = 1
Query:  103 GKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            GK + L PS  EL    R +MRK  T  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMG+
Sbjct:   18 GKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 174          

HSP 2 Score: 65.855 bits (159), Expect = 3.548e-85
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLG
Sbjct:  173 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 202          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 7.875e-85
Identity = 132/159 (83.02%), Postives = 145/159 (91.19%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMG+
Sbjct:   13 FAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 171          

HSP 2 Score: 55.0694 bits (131), Expect = 7.875e-85
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 2
Query:  566 GAVEGYRIAG-GPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AG GPLGE  D LYPGGSFDPLG
Sbjct:  170 GAVEGYRVAGNGPLGEAEDLLYPGGSFDPLG 200          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.748e-84
Identity = 132/160 (82.50%), Postives = 140/160 (87.50%), Query Frame = 1
Query:  103 GKAVNLA--PSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            GK V  +  PS  EL  G R +MRK  T  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMG+
Sbjct:   15 GKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 173          

HSP 2 Score: 65.855 bits (159), Expect = 1.748e-84
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLG
Sbjct:  172 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 201          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 3.879e-84
Identity = 131/159 (82.39%), Postives = 144/159 (90.57%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMG+
Sbjct:   13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 171          

HSP 2 Score: 55.0694 bits (131), Expect = 3.879e-84
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 2
Query:  566 GAVEGYRIAG-GPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AG GPLGE  D LYPGGSFDPLG
Sbjct:  170 GAVEGYRVAGNGPLGEAEDLLYPGGSFDPLG 200          
The following BLAST results are available for this feature:
BLAST of CN181609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB21_SOYBN6.590e-8792.86Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_SINAL8.591e-8784.18Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_MAIZE3.245e-8691.55Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_HORVU4.233e-8682.91Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT4.233e-8682.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY1.225e-8578.92Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_PEA3.548e-8582.91Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_ARATH7.875e-8583.02Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB28_PEA1.748e-8482.50Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH3.879e-8482.39Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181609 ID=CN181609; Name=CN181609; organism=Citrus sinensis; type=EST; length=655bp
GAGGCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCA
ATTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCG
TCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGT
GGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAG
CCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCG
AGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGAC
ACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACT
CGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCT
TCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGG
TTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGG
GAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCC
AGGTGGTCTTGATGGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCC
GCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCAT
TGGGT
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