CN181609

Overview
NameCN181609
Unique NameCN181609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 6.598e-84
Identity = 131/161 (81.37%), Postives = 141/161 (87.58%), Query Frame = 1 
Query:  115 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG+
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGA 183

HSP 2 Score: 65.0846 bits (157), Expect = 6.598e-84
Identity = 26/30 (86.67%), Postives = 30/30 (100.00%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GA+EGYR+AGGPLGEVTDP+YPGG+FDPLG
Sbjct:  182 GAIEGYRVAGGPLGEVTDPIYPGGNFDPLG 211
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 6.598e-84
Identity = 131/161 (81.37%), Postives = 141/161 (87.58%), Query Frame = 1 
Query:  115 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG+
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGA 183

HSP 2 Score: 65.0846 bits (157), Expect = 6.598e-84
Identity = 26/30 (86.67%), Postives = 30/30 (100.00%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GA+EGYR+AGGPLGEVTDP+YPGG+FDPLG
Sbjct:  182 GAIEGYRVAGGPLGEVTDPIYPGGNFDPLG 211
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 3.251e-83
Identity = 131/154 (85.06%), Postives = 137/154 (88.96%), Query Frame = 1 
Query:  121 APS-GNELSNGGRISMRKTGSK---SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            APS  + L    RI+MRKT +K   + SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMG+
Sbjct:   17 APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGA 170

HSP 2 Score: 64.6994 bits (156), Expect = 3.251e-83
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEV DPLYPGG+FDPLG
Sbjct:  169 GAVEGYRIAGGPLGEVVDPLYPGGAFDPLG 198
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 5.532e-83
Identity = 126/142 (88.73%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:  151 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMG+
Sbjct:   25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGA 166

HSP 2 Score: 65.855 bits (159), Expect = 5.532e-83
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLG
Sbjct:  165 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 194
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 5.068e-81
Identity = 129/156 (82.69%), Postives = 136/156 (87.18%), Query Frame = 1 
Query:  103 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMG+
Sbjct:   15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGA 161

HSP 2 Score: 67.0106 bits (162), Expect = 5.068e-81
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEVTDP+YPGGSFDPLG
Sbjct:  160 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 189
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 4.250e-80
Identity = 118/133 (88.72%), Postives = 124/133 (93.23%), Query Frame = 1 
Query:  172 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMG+
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 133

HSP 2 Score: 65.855 bits (159), Expect = 4.250e-80
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLG
Sbjct:  132 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 161
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 6.064e-79
Identity = 121/142 (85.21%), Postives = 130/142 (91.55%), Query Frame = 1 
Query:  145 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMG+
Sbjct:   30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGA 169

HSP 2 Score: 56.6102 bits (135), Expect = 6.064e-79
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+ GGPLGE  D LYPGG+FDPLG
Sbjct:  168 GAVEGYRVGGGPLGEGLDQLYPGGAFDPLG 197
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.029e-78
Identity = 115/139 (82.73%), Postives = 127/139 (91.37%), Query Frame = 1 
Query:  154 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 173

HSP 2 Score: 66.6254 bits (161), Expect = 1.029e-78
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEVTDP+YPGGSFDPLG
Sbjct:  172 GAVEGYRVAGGPLGEVTDPIYPGGSFDPLG 201
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 2.978e-78
Identity = 120/140 (85.71%), Postives = 130/140 (92.86%), Query Frame = 1 
Query:  148 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMG 567
            GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG
Sbjct:   32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169

HSP 2 Score: 56.6102 bits (135), Expect = 2.978e-78
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            G VEGYR+ GGPLGE  DP+YPGG+FDPLG
Sbjct:  169 GFVEGYRVGGGPLGEGLDPIYPGGAFDPLG 198
[Close]
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.913e-77
Identity = 120/151 (79.47%), Postives = 129/151 (85.43%), Query Frame = 1 
Query:  133 NELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            NELS        R+ M    SK+  SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+LMG+
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGA 170

HSP 2 Score: 64.3142 bits (155), Expect = 1.913e-77
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 2 
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEV DP+YPGGSFDPLG
Sbjct:  169 GAVEGYRVAGGPLGEVEDPIYPGGSFDPLG 198
The following BLAST results are available for this feature:
BLAST of CN181609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2A_PYRPY6.598e-8481.37Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY6.598e-8481.37Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_ORYSJ3.251e-8385.06Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ5.532e-8388.73Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_SOYBN5.068e-8182.69Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PEA4.250e-8088.72Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_SILPR6.064e-7985.21Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_PHYPA1.029e-7882.73Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI2.978e-7885.71Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_POLMU1.913e-7779.47Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181609 ID=CN181609; Name=CN181609; organism=Citrus sinensis; type=EST; length=655bp
GAGGCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCA
ATTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCG
TCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGT
GGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAG
CCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCG
AGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGAC
ACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACT
CGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCT
TCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGG
TTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGG
GAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCC
AGGTGGTCTTGATGGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCC
GCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCAT
TGGGT
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