CN188641

Overview
NameCN188641
Unique NameCN188641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.639e-26
Identity = 54/148 (36.49%), Postives = 89/148 (60.14%), Query Frame = 1
Query:   91 ETMASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRN 492
            E  ++  + ++L +L K+P    SAG + + D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DRN
Sbjct:    3 ELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRN 150          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.447e-26
Identity = 59/157 (37.58%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  100 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 528
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQK 161          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 1
Query:   91 ETMASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 528
            + MA +R++KE K+L ++ P   +AGP  ED  F W   I GP  +P+ GG++  T+ FP DYP  PP + F  + FHPN+  +G++C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     +   M++ DR +Y    R   +K
Sbjct:    3 KAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 59/157 (37.58%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  100 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 528
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 59/157 (37.58%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  100 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 528
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 59/157 (37.58%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  100 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 528
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 54/148 (36.49%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   91 ETMASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE-------------QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRN 492
            E  ++  + ++L +L K+P    SAG + + D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL E             +W P  T+  +++S+ S+L DPN D P   + A  ++ DRN
Sbjct:    3 ELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRN 150          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 57/145 (39.31%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  106 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 540
            +++ KE+  L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+ +A G
Sbjct:   14 RQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAQG 158          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  106 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 540
            +R+ KE+  L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T  +A G
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTDIHAQG 158          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  106 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 534
            +++ KE+  L  DPP      P  ED+   Q +I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN++SNG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+ +A
Sbjct:   14 RQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHA 156          
The following BLAST results are available for this feature:
BLAST of CN188641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2G1_HUMAN2.639e-2636.49Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UB2G2_BOVIN3.447e-2637.58Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC7_SCHPO4.501e-2635.00Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UB2G2_PONAB4.501e-2637.58Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE4.501e-2637.58Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN4.501e-2637.58Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G1_MACFA4.501e-2636.49Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UBE2S_XENTR1.310e-2539.31Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UB2SB_XENLA1.310e-2540.00Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2S_RANCA2.918e-2539.86Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188641 ID=CN188641; Name=CN188641; organism=Citrus sinensis; type=EST; length=734bp
CCCTTTGTTCTATTTTCCCGATCTCCCTGTCTCCCTCACGAATCCACATA
TTGCACTTAAAAGTCAGGAGGATCTGCTGCTTCTCAGGTTGAAACCATGG
CGTCGAAACGGATCTTGAAGGAGCTCAAAGATTTGCAGAAGGATCCTCCT
ACATCATGCAGTGCCGGTCCTGTTGCTGAAGACATGTTTCATTGGCAGGC
GACAATCATGGGTCCTCCAGATAGTCCGTATGCTGGGGGTGTTTTTCTAG
TTACCATCCATTTTCCCCCAGACTATCCATTCAAGCCTCCCAAGGTAGCA
TTCAGGACAAAGGTATTTCATCCTAACATAAATAGCAATGGGAGCATTTG
CCTTGACATCTTGAAGGAACAATGGAGTCCTGCTCTTACCATTTCCAAGG
TGTTGCTATCAATCTGTTCATTATTGACGGATCCAAATCCCGATGATCCG
TTGGTACCAGAAATTGCTCACATGTACAAGACCGACAGGAACAAGTACGA
GACAACTGCAAGGAGCTGGACCCAGAAGTATGCCATGGGCTAAACCTGGG
TTATGGTGTGTGAGGGGGTTCCTTTTCTTTTTAATTCTGGTTTCGAGTTA
ATGTATGAATATTCTGTCTGTTCAATCCTAAAAAGTGGACCATAAGAAAG
GTCCACTACATCCCCCGAATTGGAAAGGAGAAACGGGTTGCTTCTTAATT
GTTGTATGGATAATGTCACTTTGGTCAATCAAAT
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