CN188641

Overview
NameCN188641
Unique NameCN188641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.470e-24
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 1
Query:   73 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 534
            S  S VE ++    ++++KEL+D++  PP          D+   QA I GP  +PYA G+F V +    D+P  PPK  F TK+FHPN+ SNG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:    3 SQYSNVENLSPQTIRQVMKELQDMESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.470e-24
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  100 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY 498
            AS  + K+LKDL K P    SAG V E ++F W  +IMGPPD+ Y GG F   + FP +YP  PP V F ++++HPN+ S+G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++ +R ++
Sbjct:    6 ASLLLQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEF 152          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.470e-24
Identity = 56/138 (40.58%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  112 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQ 525
            + KE+  L  DPP      P  ED+   Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+  NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T+
Sbjct:   16 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.226e-24
Identity = 62/157 (39.49%), Postives = 86/157 (54.78%), Query Frame = 1
Query:   73 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 534
            S  S VE ++    ++++KEL+D++  PP          D+   QA I GP  +PYA GVF V +    D+P  PPK  F TK+FHPN+ SNG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:    3 SQYSNVENLSPQTIRQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.226e-24
Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 1
Query:   97 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIA-----HMYKTDRNKYETTARSWTQK 528
            M S  +L E K+L  +P          +++  W   + GPPD+ Y GG+F   I FPP YP++PP++ F ++++HPNI S+G +C+ IL     +EQ   WSPA  I  VLLS+ SLL +PNPD P   + A     ++YK D   Y    +   +K
Sbjct:    1 MVSSFLLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKK 157          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.213e-24
Identity = 54/153 (35.29%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  100 ASKRIL-KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 513
            AS+++L K+LK++QK+PP   S G V +  +F W+  I+GP D+ Y GG F  T+ FP DYP  PPK+ F T+++HPN++ NG +C+ IL              E+W P  +   +L+S+ S+L+ PN + P   + A  ++ +  +++   R
Sbjct:    5 ASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVR 157          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.213e-24
Identity = 57/158 (36.08%), Postives = 93/158 (58.86%), Query Frame = 1
Query:   34 PHESTYCT*KSGGSAASQVETMA-SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 501
            PH ++    K+  SA   V+  + +KR+  EL  L        SA P ++ ++ HW  TI GP D+ Y G  F +++ FP +YP+ PP + F + ++HPN++ +G+ICLDILK++WS    +  +LLS+ SLL +PN   PL  + A ++  D  +Y+
Sbjct:   10 PHTNS----KNSSSAGMAVDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 57/157 (36.31%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   64 SGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 534
            SG S    +     +++ KE+ DL   PP      P  +D+   QATI GP  +PY GG F + +    D+P  PPK  F TK+FHPN+  NG IC++ LK+ W   L +  +LL+I  LL  PNP+  L  E   +     + Y   AR  T+ +A
Sbjct:    2 SGSSNVENLSPQIIRQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTEIHA 158          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   94 TMASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 501
            + AS  + K+LKDL K P    SAG V E ++F W  TI+GPPD+ Y GG F   + FP +YP  PP V F + ++HPN+ S+G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  R++++
Sbjct:    3 SQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFK 152          
BLAST of CN188641 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = 1
Query:   73 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 534
            S  S VE ++    ++++KEL+D++  PP          D+   QA I GP  +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:    3 SQYSNVENLSPQTIRQVMKELQDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
The following BLAST results are available for this feature:
BLAST of CN188641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2S_DROGR2.470e-2438.85Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBC14_ARATH2.470e-2438.78Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UB2SA_XENLA2.470e-2440.58Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBE2S_DROVI3.226e-2439.49Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBC_ASFM23.226e-2437.58Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC15_SCHPO4.213e-2435.29Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBC11_SCHPO4.213e-2436.08Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBE2S_BRAFL5.502e-2436.31Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBC7_ARATH5.502e-2438.00Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBE2S_DROMO7.186e-2438.22Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188641 ID=CN188641; Name=CN188641; organism=Citrus sinensis; type=EST; length=734bp
CCCTTTGTTCTATTTTCCCGATCTCCCTGTCTCCCTCACGAATCCACATA
TTGCACTTAAAAGTCAGGAGGATCTGCTGCTTCTCAGGTTGAAACCATGG
CGTCGAAACGGATCTTGAAGGAGCTCAAAGATTTGCAGAAGGATCCTCCT
ACATCATGCAGTGCCGGTCCTGTTGCTGAAGACATGTTTCATTGGCAGGC
GACAATCATGGGTCCTCCAGATAGTCCGTATGCTGGGGGTGTTTTTCTAG
TTACCATCCATTTTCCCCCAGACTATCCATTCAAGCCTCCCAAGGTAGCA
TTCAGGACAAAGGTATTTCATCCTAACATAAATAGCAATGGGAGCATTTG
CCTTGACATCTTGAAGGAACAATGGAGTCCTGCTCTTACCATTTCCAAGG
TGTTGCTATCAATCTGTTCATTATTGACGGATCCAAATCCCGATGATCCG
TTGGTACCAGAAATTGCTCACATGTACAAGACCGACAGGAACAAGTACGA
GACAACTGCAAGGAGCTGGACCCAGAAGTATGCCATGGGCTAAACCTGGG
TTATGGTGTGTGAGGGGGTTCCTTTTCTTTTTAATTCTGGTTTCGAGTTA
ATGTATGAATATTCTGTCTGTTCAATCCTAAAAAGTGGACCATAAGAAAG
GTCCACTACATCCCCCGAATTGGAAAGGAGAAACGGGTTGCTTCTTAATT
GTTGTATGGATAATGTCACTTTGGTCAATCAAAT
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