CN181604

Overview
NameCN181604
Unique NameCN181604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9372 contig Csv1_Contig9372:209..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181604 vs. ExPASy Swiss-Prot
Match: DHB8_RAT (Estradiol 17-beta-dehydrogenase 8 OS=Rattus norvegicus GN=Hsd17b8 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 54/166 (32.53%), Postives = 91/166 (54.82%), Query Frame = -3
Query:  194 IMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGQFLKTDGIANAALYLASDESSYVSGQNLVVDGG 688
            ++ + AGI    F  +L   + D +R+I VN  G FL  + AA+ +V    +G I+  +S   ++  +G   Y  SK G++GL +  A ELG++GIR N V P  +AT M+ K    P  ++  ++ M  L G     + +A+   +LAS++S Y++G ++ V GG
Sbjct:   97 VVVSCAGITRDEF--LLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIVGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK---MPEKVKDKVTAMIPL-GHMGDPEDVADVVAFLASEDSGYITGASVEVSGG 256          
BLAST of CN181604 vs. ExPASy Swiss-Prot
Match: DHB8_MOUSE (Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus GN=Hsd17b8 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 54/166 (32.53%), Postives = 91/166 (54.82%), Query Frame = -3
Query:  194 IMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGQFLKTDGIANAALYLASDESSYVSGQNLVVDGG 688
            ++ + AGI    F  +L   + D +R+I VN  G FL  + AA+ +V    +G I+  +S   ++  +G   Y  SK G++GL +  A ELG++GIR N V P  +AT M+ K    P  ++  ++ M  L G     + +A+   +LAS++S Y++G ++ V GG
Sbjct:   98 VVVSCAGITRDEF--LLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIIGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK---MPEKVKDKVTAMIPL-GHMGDPEDVADVVAFLASEDSGYITGASVEVSGG 257          
BLAST of CN181604 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 50/169 (29.59%), Postives = 89/169 (52.66%), Query Frame = -3
Query:  194 KLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGQFLKTDGIANAALYLASDESS-YVSGQNLVVDGG 697
            ++D++ NNAGI   +   +L     D + +I++N  G FL  K  +++M+ Q+ G I+   S    +   G   Y+ +K G++G  K +A EL   G+ VN V+P  +AT M+     +P L    +++ G       + + +A    +LA+D ++ Y++GQ   VDGG
Sbjct:   84 RIDVLVNNAGITRDTL--LLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIATDMTENLNAEPILQFIPLARYG-------QPEEVAGTIRFLATDPAAAYITGQTFNVDGG 243          
BLAST of CN181604 vs. ExPASy Swiss-Prot
Match: LIMC_RHOER ((-)-trans-carveol dehydrogenase OS=Rhodococcus erythropolis GN=limC PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.686e-14
Identity = 60/190 (31.58%), Postives = 99/190 (52.11%), Query Frame = -3
Query:  194 LGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVP-----QQKGCILFTASACTEIAGLGSPA----YTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGV----DPAL-------IESSMSQMGNLKGQFLKTDGIANAALYLASDESSYVSGQNLVVDGG 703
            LG+LDI+  NAGI    F S  D P +   ++I++N  G +    H A+V VP     ++ G I+ T+SA    AGL   A    Y+ +K+G++GL++ LA EL  + +RVN + P  + T M    G      P L        E + +    L   ++++  ++NA L+L S+++ Y++G  + VD G
Sbjct:   93 LGRLDIVSANAGIASVPFLSH-DIPDNTWRQMIDINLTGVW----HTAKVAVPHILAGERGGSIVLTSSA----AGLKGYAQISHYSAAKHGVVGLMRSLALELAPHRVRVNSLHPTQVNTPMIQNEGTYRIFSPDLENPTREDFEIASTTTNALPIPWVESVDVSNALLFLVSEDARYITGAAIPVDAG 273          

HSP 2 Score: 25.7942 bits (55), Expect = 2.686e-14
Identity = 13/41 (31.71%), Postives = 23/41 (56.10%), Query Frame = -2
Query:  696 DKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGK 818
            D+  +D+ + LG+    IH D+ + + +   VD AVS  G+
Sbjct:   56 DQTAKDV-ENLGRKAIVIHADVRDLESLTAEVDRAVSTLGR 95          
BLAST of CN181604 vs. ExPASy Swiss-Prot
Match: FABG_CHLTR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia trachomatis GN=fabG PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 57/178 (32.02%), Postives = 86/178 (48.31%), Query Frame = -3
Query:  188 LDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGQFLK---------TDGIANAALYLASDESSYVSGQNLVVDGGFS 694
            +D++ NNAGI   +   ++   + +   +IN N    +       R M+  + G I+  +S        G   Y  +K GI+G  K L+ E+G   IRVNC++P  + T M             + S   NLK ++LK          + IA AAL+LASD SSY++GQ L VDGG +
Sbjct:   86 IDVIVNNAGITRDAL--LMRMSEEEWSSVINTNLGSIYNVCSAVIRPMIKARSGAIINISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDM-------------TKSLNDNLKNEWLKGVPLGRVGMPEEIAKAALFLASDGSSYITGQVLSVDGGMA 248          
BLAST of CN181604 vs. ExPASy Swiss-Prot
Match: FABG_BUCAP (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=fabG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 53/170 (31.18%), Postives = 88/170 (51.76%), Query Frame = -3
Query:  194 LDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGV---DPALIESSMSQMGNLKGQFLKTDGIANAALYLASDESSYVSGQNLVVDGG 694
            +DI+ NNAGI   +   ++     + E +I +N    F  +K   R M+ ++ G I+   S    +   G   Y+ SK G++G  K LA E+ Q GI VN VSP  + T ++    V      L +  M ++G         + IANA ++L+S+++SY++GQ + V+GG
Sbjct:   80 IDILINNAGITSDNL--LVYMSNKEWENVIKINLTSVFYMSKSVIRSMIKKRYGRIVTIGSVIGYLGNRGQINYSASKSGLIGFHKSLALEVAQKGITVNIVSPGFIKTNLTKNLNVFQYKKHLSKIPMKRIGT-------AEEIANAVIFLSSEKASYITGQTIHVNGG 240          
BLAST of CN181604 vs. ExPASy Swiss-Prot
Match: FABG4_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 4 (Fragment) OS=Brassica napus GN=bkr4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.500e-14
Identity = 52/174 (29.89%), Postives = 93/174 (53.45%), Query Frame = -3
Query:  185 GKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK-GQFLKTDGIANAALYLA-SDESSYVSGQNLVVDGGFSV 700
            G +D++ NNAG        ++   KS  + ++++N  G FL ++ A ++M+ ++KG I+  AS    I  +G   Y  +K G++G  K  A E     I VN V P  +A+ M+ K G D   +E  +  +G +  G++ + + +A    +LA S  +SY++GQ   +DGG ++
Sbjct:   91 GTIDVVVNNAGDT-----LLIRMKKSQWDEVMDLNLTGVFLCSQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED---MEKKI--LGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQTFTIDGGIAI 254          

HSP 2 Score: 21.557 bits (44), Expect = 3.500e-14
Identity = 9/20 (45.00%), Postives = 14/20 (70.00%), Query Frame = -2
Query:  699 DISNEDEVINLVDTAVSKFG 758
            D+S E +V  ++ TAV K+G
Sbjct:   72 DVSKEADVDAMMKTAVDKWG 91          
BLAST of CN181604 vs. ExPASy Swiss-Prot
Match: LINC_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linC PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 57/177 (32.20%), Postives = 93/177 (52.54%), Query Frame = -3
Query:  182 GKLDIMYNNAGILDRSFGSILDTPKSDLERL---INVNTIGGFLGAKHAARVMVPQ-QKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGQFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 700
            G LD  +NNA I        L   +  LER    +++N  G FL  K+    M+ +  KG I+ TASA   +       Y  +K+ ++GL +  AA+ G++GIRVN + P  + T M  +   + A +E  ++ +  + G+F +    A AA++L SD +S+V+G  L  DGGF+ +
Sbjct:   79 GGLDGSFNNAAIPQAG----LPLAEVSLERFRQSMDINVTGTFLCMKYQILAMIERGTKGSIVNTASAAGVVGVPMHGEYVGAKHAVVGLTRVAAADYGKHGIRVNALVPGAVRTPMLQRAMDNDAGLEPYLNSIHPI-GRFSEPHEQAQAAVWLLSDAASFVTGSCLAADGGFTAI 250          
BLAST of CN181604 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 56/171 (32.75%), Postives = 91/171 (53.22%), Query Frame = -3
Query:  194 GKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTAS--ACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGQFLKTDGIANAALYLASDESSYVSGQNLVVDGG 700
            G +DI+ +NA +    FGS++D P+   +++++VN     L  K     M  +  G I+  +S  A +    LG   Y +SK  +LGL K LA EL +  +RVNC++P  + T  S     DPA  ES  +    +K +  K +  A    +L S+++SY++G+ +VV GG
Sbjct:   90 GGVDILISNAAV-SPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGP--YNVSKTALLGLTKNLALELAESNVRVNCLAPGLIRTSFSRVLWEDPARQESIKATF-QIK-RIGKPEECAGIVSFLCSEDASYITGETVVVAGG 255          
BLAST of CN181604 vs. ExPASy Swiss-Prot
Match: DHB8_HUMAN (Estradiol 17-beta-dehydrogenase 8 OS=Homo sapiens GN=HSD17B8 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 52/166 (31.33%), Postives = 91/166 (54.82%), Query Frame = -3
Query:  194 IMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGQFLKTDGIANAALYLASDESSYVSGQNLVVDGG 688
            ++ + AGI    F  +L   + D +++I VN  G FL  + AA+ +V    +G I+  +S   ++  +G   Y  SK G++GL +  A ELG++GIR N V P  +AT M+ K    P  +   +++M  + G     + +A+   +LAS++S Y++G ++ V GG
Sbjct:   99 VVVSCAGITQDEF--LLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK---VPQKVVDKITEMIPM-GHLGDPEDVADVVAFLASEDSGYITGTSVEVTGG 258          
The following BLAST results are available for this feature:
BLAST of CN181604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
DHB8_RAT1.251e-1432.53Estradiol 17-beta-dehydrogenase 8 OS=Rattus norveg... [more]
DHB8_MOUSE1.251e-1432.53Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus ... [more]
FABG1_SYNY31.634e-1429.593-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]
LIMC_RHOER2.686e-1431.58(-)-trans-carveol dehydrogenase OS=Rhodococcus ery... [more]
FABG_CHLTR2.787e-1432.023-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
FABG_BUCAP2.787e-1431.183-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
FABG4_BRANA3.500e-1429.893-oxoacyl-[acyl-carrier-protein] reductase 4 (Frag... [more]
LINC_PSEPA3.639e-1432.202,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
DHRS4_BOVIN3.639e-1432.75Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHB8_HUMAN3.639e-1431.33Estradiol 17-beta-dehydrogenase 8 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181604 ID=CN181604; Name=CN181604; organism=Citrus sinensis; type=EST; length=819bp
CCGGAACTGACTATTGTAATGTGGTTTCAAATATGATAATTGGAAGCAAA
TTTGTGAATTATTTTTCAGAATGAATGCATTATTACACGTACGCAGCAGA
GTACGGCATCCTCCATCATCTAGAAATTAAAGCTCCAATTGATTACTTGA
TAAGACCGTAAGCCCTCATAATTGTAGGATTCACGACGCTGAATCCTCCA
TCCACAACAAGATTTTGCCCGCTCACATAACTTGATTCATCACTAGCCAA
ATAGAGGGCAGCATTTGCAATGCCATCAGTTTTTAGAAATTGCCCTTTTA
GATTACCCATCTGGCTCATTGATGATTCTATTAGAGCCGGATCGACTCCA
CCTTTCATCGACATTCCTGTCGCCAAACCATAAGGCGAGACGCAATTTAC
TCTTATTCCATACTGTCCAAGCTCTGCTGCCAAGCACTTTACTAGTCCTA
AAATCCCATATTTGGATATTGTATAAGCAGGGGAGCCAAGCCCTGCAATT
TCTGTACAAGCACTAGCTGTAAACAGTATGCAACCTTTTTGCTGTGGCAC
CATGACTCTTGCAGCATGCTTGGCTCCTAAGAAACCACCTATAGTGTTTA
CATTAATTAAGCGTTCTAGATCAGACTTTGGAGTGTCCAAAATGCTCCCA
AAGCTGCGGTCAAGAATTCCTGCATTGTTGTACATGATATCGAGCTTTCC
CAAATTTAGAAACGGCGGTATCAACGAGATTGATGACTTCATCTTCATTT
GAGATATCACAATGGATGTAGCAAACATCTTGGCCCAGCTTATCAGCAAG
GTCTTCGCCAAGCTTATCC
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