CN188639

Overview
NameCN188639
Unique NameCN188639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP12_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Arabidopsis thaliana GN=TOPP2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.253e-28
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = -1
Query:  381 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 770
            +HGGLSP L  ++ I+ + R  +VP  G +CDLLWSDP  D  GWG++ RG  YTFG D  ++F   N + LI RAHQ+V +GY +  D+ +VT+FSAPNYC    N  A++ + E++  +F    PA R+
Sbjct:  178 MHGGLSPDLTNVEQIKNIKRPTDVPDSGLLCDLLWSDPSKDVKGWGMNDRGVSYTFGPDKVAEFLIKNDMDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDESLMCSFQILKPADRK 308          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEEL (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis elegans GN=gsp-2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.861e-28
Identity = 58/133 (43.61%), Postives = 86/133 (64.66%), Query Frame = -1
Query:  372 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEP 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++ ++F H + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N  +++ + E +  +F    PA ++  P
Sbjct:  172 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVTGWGENDRGVSFTFGPEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGSMMTVDETLMCSFQILKPADKKKYP 304          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEBR (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis briggsae GN=gsp-2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.861e-28
Identity = 58/133 (43.61%), Postives = 86/133 (64.66%), Query Frame = -1
Query:  372 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEP 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++ ++F H + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N  +++ + E +  +F    PA ++  P
Sbjct:  172 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVTGWGENDRGVSFTFGPEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGSMMTVDETLMCSFQILKPADKKKYP 304          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1A_RAT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Rattus norvegicus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 58/129 (44.96%), Postives = 84/129 (65.12%), Query Frame = -1
Query:  384 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPR 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++ ++F H + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N  A++ + E +  +F    PA +
Sbjct:  173 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1A_RABIT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 58/129 (44.96%), Postives = 84/129 (65.12%), Query Frame = -1
Query:  384 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPR 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++ ++F H + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N  A++ + E +  +F    PA +
Sbjct:  173 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1A_MOUSE (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Mus musculus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 58/129 (44.96%), Postives = 84/129 (65.12%), Query Frame = -1
Query:  384 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPR 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++ ++F H + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N  A++ + E +  +F    PA +
Sbjct:  173 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1A_HUMAN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 58/129 (44.96%), Postives = 84/129 (65.12%), Query Frame = -1
Query:  384 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPR 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++ ++F H + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N  A++ + E +  +F    PA +
Sbjct:  173 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1A_CANFA (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Canis familiaris GN=PPP1CA PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 58/129 (44.96%), Postives = 84/129 (65.12%), Query Frame = -1
Query:  384 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPR 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++ ++F H + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N  A++ + E +  +F    PA +
Sbjct:  173 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1A_BOVIN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Bos taurus GN=PPP1CA PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 58/129 (44.96%), Postives = 84/129 (65.12%), Query Frame = -1
Query:  384 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPR 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++ ++F H + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N  A++ + E +  +F    PA +
Sbjct:  173 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP13_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Arabidopsis thaliana GN=TOPP3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.528e-27
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = -1
Query:  408 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNF 770
            +HGGLSP L  LD IR + R  ++P  G +CDLLWSDPD D  GWG + RG  YTFG D   +F  T+ L LI RAHQ+V +GY +  ++ +VT+FSAPNYC    N  A++ + +++  +F
Sbjct:  169 MHGGLSPELKHLDEIRNIPRPADIPDHGLLCDLLWSDPDKDIEGWGENDRGVSYTFGADKVEEFLQTHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDSLTCSF 290          
The following BLAST results are available for this feature:
BLAST of CN188639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
PP12_ARATH5.253e-2845.04Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
GLC7B_CAEEL6.861e-2843.61Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
GLC7B_CAEBR6.861e-2843.61Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
PP1A_RAT8.961e-2844.96Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_RABIT8.961e-2844.96Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_MOUSE8.961e-2844.96Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_HUMAN8.961e-2844.96Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_CANFA8.961e-2844.96Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_BOVIN8.961e-2844.96Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP13_ARATH1.528e-2747.54Serine/threonine-protein phosphatase PP1 isozyme 3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188639 ID=CN188639; Name=CN188639; organism=Citrus sinensis; type=EST; length=770bp
TTTTTTTCATCTTGAGCCAGCTCCCATCAGCATGCAACTGAAAGCTGCCC
CTTATCTGCTTTCTACCTCAAAATTCATAAAATTACAGGCCATGATATAA
CATGTTATTGCCGCCCACTTAGACAATATACAAGACAACAGGCCATTGAT
GCCTTCTGTCAGTACTCCTATGGACTCCTTCAGCACATCAACAAAGCAGT
AGTAGGGCAAAACTCGAAACAAAAGAATGATGTTGTAACCTCAACTTAAA
CAACAAAAGCTCCTCCTTTTTAAGGACACATCTACCTGGTAGGTAAACAA
ACATGAATTACAAACAGATGGTGGAAATATTGAAATTACAAAAAATAATC
AGGCGTCTTGCGCGTGGTGTCAGGCTCTATTTGCCGTGGTGCTGGATCAA
ATTGGAGAAAATTCTGCTCCATATTCTCCCCAATCTCTAAAATTGCAGCC
ATATTCCCACATCGGTAACAATAGTTAGGAGCACTAAATACAGTCACCAC
ATTCTTATCCTGACACCAATTGTATCCTTCCATGACAAGCTGGTGGGCTC
TTGAAATAAGACTGAGTCCGTTGGTGTGGTTGAACTGAGATGCTATATCC
TGCCCAAATGTATAGCCCGCACCACGGGGAGATATTCCCCACCCACAGCG
GTCATCTGGATCAGACCACAAGAGATCGCACATGGGTCCTTCATGTGGAA
CCTCCTGTATTCGGTCCAGGGCCCTAATGTTATCTAGTGTATCCAAAGAT
GGTGAAAGTCCTCCATGCAA
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