CN188639

Overview
NameCN188639
Unique NameCN188639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1_PHAVU (Serine/threonine-protein phosphatase PP1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = -1
Query:  384 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC-GWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPR 770
            +HGGLSP L++LD I+ + R  E+P  G +CDLLWSDPD    GW  S RG   TFG D+ ++F   N L L+ R HQ+V +GY +   + +VT+FSAPNY     N  A+L + +++  +F    PA R
Sbjct:  166 MHGGLSPELESLDQIKEIQRPTEIPDSGLLCDLLWSDPDSSIEGWAESDRGVSCTFGPDVVAEFLDKNDLDLVCRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDDSLVCSFEILKPADR 295          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1_BRANA (Serine/threonine-protein phosphatase PP1 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 61/141 (43.26%), Postives = 81/141 (57.45%), Query Frame = -1
Query:  351 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC-GWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRKTP 770
            +HGGLSP LD L+ IR + R  E+P  G +CDLLWSDPD +  GW  S RG   TFG D  ++F   N L LI R HQ+V +GY +   + +VT+FSAPNY     N  A+L + E++  +F    PA         +K P
Sbjct:  110 MHGGLSPELDNLNQIREIQRPTEIPDSGLLCDLLWSDPDQKIEGWADSDRGISCTFGADKVAEFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEIMKPALASSSGHPLKKVP 250          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP12_YEAST (Serine/threonine-protein phosphatase PP1-2 OS=Saccharomyces cerevisiae GN=GLC7 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 55/132 (41.67%), Postives = 84/132 (63.64%), Query Frame = -1
Query:  378 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQI 770
            +HGGLSP L++++ IR + R  ++P  G +CDLLWSDPD D  GW  + RG  +TFG D+ ++F     + LI RAHQ+V +GY +   + +VT+FSAPNYC    N  A++ + E++  +F    PA + +
Sbjct:  171 MHGGLSPDLNSMEQIRRVMRPTDIPDVGLLCDLLWSDPDKDIVGWSENDRGVSFTFGPDVVNRFLQKQDMELICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLLCSFQILKPAQKSL 302          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP11_DROME (Serine/threonine-protein phosphatase alpha-1 isoform OS=Drosophila melanogaster GN=Pp1alpha-96A PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.207e-26
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = -1
Query:  381 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++  +F   +   LI RAHQ+V +GY +   + +VT+FSAPNYC    N  A++ + + +  +F    PA ++
Sbjct:  171 HGGLSPDLSSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVGKFLQKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPADKR 300          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEEL (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis elegans GN=gsp-1 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.207e-26
Identity = 56/130 (43.08%), Postives = 82/130 (63.08%), Query Frame = -1
Query:  381 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 767
            HGGLSP L  ++ IR + R  +VP  G +CDLLWSDPD D  GWG + RG  +TFG D+ ++F + + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N   ++ + E +  +F    P+ ++
Sbjct:  173 HGGLSPDLQNMEQIRRVMRPTDVPDTGLLCDLLWSDPDKDVTGWGENDRGVSFTFGPDVVAKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKK 302          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEBR (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis briggsae GN=gsp-1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.207e-26
Identity = 56/130 (43.08%), Postives = 82/130 (63.08%), Query Frame = -1
Query:  381 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 767
            HGGLSP L  ++ IR + R  +VP  G +CDLLWSDPD D  GWG + RG  +TFG D+ ++F + + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N   ++ + E +  +F    P+ ++
Sbjct:  173 HGGLSPDLQNMEQIRRVMRPTDVPDTGLLCDLLWSDPDKDVTGWGENDRGVSFTFGPDVVAKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKK 302          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP13_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Nicotiana tabacum GN=NPP3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.765e-26
Identity = 59/131 (45.04%), Postives = 81/131 (61.83%), Query Frame = -1
Query:  381 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 770
            +HGGLSP L +LD IR L R   +P  G +CDL  SDP  D  GWG++ RG  YTFG D  S+F   + L L+ RAHQ+V +GY +  +  +VT+FSAPNYC    N  A++ + EN+  +F    PA ++
Sbjct:  169 MHGGLSPDLSSLDQIRNLPRPTAIPDTGLLCDLQRSDPGKDVKGWGMNDRGVSYTFGPDKVSEFLSKHDLDLVCRAHQVVEDGYEFFAESELVTIFSAPNYCGEFDNAGAMMSVDENLLCSFQILKPAEKK 299          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP12_DROME (Serine/threonine-protein phosphatase alpha-2 isoform OS=Drosophila melanogaster GN=Pp1-87B PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.765e-26
Identity = 55/130 (42.31%), Postives = 83/130 (63.85%), Query Frame = -1
Query:  381 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++ ++F   +   LI RAHQ+V +GY +   + +VT+FSAPNYC    N  A++ + + +  +F    PA ++
Sbjct:  171 HGGLSPDLTSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLQKHEFDLICRAHQVVEDGYEFFAKRMLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPADKR 300          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1B_CANFA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Canis familiaris GN=PPP1CB PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 4.917e-26
Identity = 56/130 (43.08%), Postives = 82/130 (63.08%), Query Frame = -1
Query:  381 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 767
            HGGLSP L +++ IR + R  +VP  G +CDLLWSDPD D  GWG + RG  +TFG D+ S+F + + L LI RAHQ+V +GY +   + +V +FSAPNYC    N   ++ + E +  +F    P+ ++
Sbjct:  172 HGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVILFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKK 301          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP19_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = -1
Query:  387 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC-GWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAP 770
            +HGGLSP L+ L  IR + R  E+P  G +CDLLWSDPD +  GW  S RG   TFG D+ + F   N L LI R HQ+V +GY +   + +VT+FSAPNY     N  A+L + +++  +F    PAP
Sbjct:  174 MHGGLSPELENLGQIREIQRPTEIPDNGLLCDLLWSDPDQKNEGWTDSDRGISCTFGADVVADFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDQSLVCSFEILKPAP 302          
The following BLAST results are available for this feature:
BLAST of CN188639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
PP1_PHAVU1.690e-2643.85Serine/threonine-protein phosphatase PP1 OS=Phaseo... [more]
PP1_BRANA1.690e-2643.26Serine/threonine-protein phosphatase PP1 (Fragment... [more]
PP12_YEAST1.690e-2641.67Serine/threonine-protein phosphatase PP1-2 OS=Sacc... [more]
PP11_DROME2.207e-2642.31Serine/threonine-protein phosphatase alpha-1 isofo... [more]
GLC7A_CAEEL2.207e-2643.08Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
GLC7A_CAEBR2.207e-2643.08Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
PP13_TOBAC3.765e-2645.04Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP12_DROME3.765e-2642.31Serine/threonine-protein phosphatase alpha-2 isofo... [more]
PP1B_CANFA4.917e-2643.08Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP19_ARATH6.422e-2644.96Serine/threonine-protein phosphatase PP1 isozyme 9... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188639 ID=CN188639; Name=CN188639; organism=Citrus sinensis; type=EST; length=770bp
TTTTTTTCATCTTGAGCCAGCTCCCATCAGCATGCAACTGAAAGCTGCCC
CTTATCTGCTTTCTACCTCAAAATTCATAAAATTACAGGCCATGATATAA
CATGTTATTGCCGCCCACTTAGACAATATACAAGACAACAGGCCATTGAT
GCCTTCTGTCAGTACTCCTATGGACTCCTTCAGCACATCAACAAAGCAGT
AGTAGGGCAAAACTCGAAACAAAAGAATGATGTTGTAACCTCAACTTAAA
CAACAAAAGCTCCTCCTTTTTAAGGACACATCTACCTGGTAGGTAAACAA
ACATGAATTACAAACAGATGGTGGAAATATTGAAATTACAAAAAATAATC
AGGCGTCTTGCGCGTGGTGTCAGGCTCTATTTGCCGTGGTGCTGGATCAA
ATTGGAGAAAATTCTGCTCCATATTCTCCCCAATCTCTAAAATTGCAGCC
ATATTCCCACATCGGTAACAATAGTTAGGAGCACTAAATACAGTCACCAC
ATTCTTATCCTGACACCAATTGTATCCTTCCATGACAAGCTGGTGGGCTC
TTGAAATAAGACTGAGTCCGTTGGTGTGGTTGAACTGAGATGCTATATCC
TGCCCAAATGTATAGCCCGCACCACGGGGAGATATTCCCCACCCACAGCG
GTCATCTGGATCAGACCACAAGAGATCGCACATGGGTCCTTCATGTGGAA
CCTCCTGTATTCGGTCCAGGGCCCTAATGTTATCTAGTGTATCCAAAGAT
GGTGAAAGTCCTCCATGCAA
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