CN188639

Overview
NameCN188639
Unique NameCN188639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP13_DROME (Serine/threonine-protein phosphatase alpha-3 isoform OS=Drosophila melanogaster GN=Pp1-13C PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = -1
Query:  381 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 767
            HGGLSP L +++ IR + R  +VP +G +CDLLWSDPD D  GWG + RG  +TFG ++  +F   + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N  A++ +   +  +F    P  ++
Sbjct:  171 HGGLSPDLTSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTIGWGENDRGVSFTFGAEVVVKFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDNTLMCSFQILKPVEKR 300          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1B_DROME (Serine/threonine-protein phosphatase beta isoform OS=Drosophila melanogaster GN=flw PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.387e-26
Identity = 57/130 (43.85%), Postives = 82/130 (63.08%), Query Frame = -1
Query:  381 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 767
            HGGLSP L  ++ IR L R  +VP  G +CDLLWSDPD D  GWG + RG  +TFG D+ S+F + + L LI RAHQ+V +GY +   + +VT+FSAPNYC    N   ++ + + +  +F    P+ ++
Sbjct:  172 HGGLSPDLQGMEQIRRLMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGVDVVSKFLNRHELDLICRAHQVVEDGYEFFARRQLVTLFSAPNYCGEFDNAGGMMTVDDTLMCSFQILKPSEKK 301          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1_MEDVA (Serine/threonine-protein phosphatase PP1 OS=Medicago varia GN=PP1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.095e-25
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = -1
Query:  408 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPD-DRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNF 770
            +HGGLSP L  LD IR + R  +VP  G +CDLLW+DPD D  GWG + RG  +TFG D   +F   + L LI RAHQ+V +GY +   + +VTVFSAPNYC    N  A++ + +++  +F
Sbjct:  169 MHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDSLTCSF 290          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP12_TRYBB (Serine/threonine-protein phosphatase PP1(5.9) OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.436e-25
Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = -1
Query:  393 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC--GWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDP 770
            +HGGLSP L  LD IR + R  +VP  G +CDLLWSDP       W  + RG  +TF + +   FN    L LI RAHQ+V  GY +   + +VTVFSAPNYC    N  A + + EN+  +F+Q +P
Sbjct:  210 MHGGLSPELTDLDQIRRILRPTDVPDSGLICDLLWSDPSTNMESNWSENDRGVSWTFSESVVKSFNKKFDLDLICRAHQVVDAGYEFFAARQLVTVFSAPNYCDEFDNAGAFMCVDENLMCSFVQIEP 337          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP11_TRYBB (Serine/threonine-protein phosphatase PP1(4.8) OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.066e-24
Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = -1
Query:  393 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC--GWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDP 770
            +HGGLSP L  LD IR + R  +VP  G +CDLLWSDP       W  + RG  +TF + +   FN    L LI RAHQ+V  GY +   + +VTVFSAPNYC    N  A + + EN   +F++ +P
Sbjct:  210 MHGGLSPELTDLDQIRRILRPTDVPDSGLICDLLWSDPSTNMESNWSENDRGVSWTFSESVVKSFNKKFDLDLICRAHQVVDAGYEFFAARQLVTVFSAPNYCDEFDNAGAFMCVDENFMCSFIRIEP 337          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP1_DICDI (Serine/threonine-protein phosphatase PP1 OS=Dictyostelium discoideum GN=pppB PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24
Identity = 55/131 (41.98%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  381 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC-GWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 770
            +HGGLSP L  +D IR + R   VP  G +CDLLW+DPD    GW  + RG  YTFG D+   F   + L L+ RAHQ+V +GY +   + +VT+FSAPNY     N  A++ + E +  +F    PA ++
Sbjct:  168 MHGGLSPDLKNMDQIRRITRPTVVPDFGLLCDLLWADPDKNIQGWEDNDRGVSYTFGADVVESFLKKHDLDLVCRAHQVVEDGYEFFAKRQLVTLFSAPNYFGEFDNAGAMMGVDETLMCSFQILKPADKK 298          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = -1
Query:  387 LHGGL-SPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEI-GENMEQNFLQFDPAP 770
            +HGGL S    TLD+IR ++R ++ P  GPMCDLLWSDP  + G  IS RG    FG D+   F   N L  I R+H++  EGY        VTVFSAPNYC + GN A+ + + G ++   F QF   P
Sbjct:  351 MHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 480          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.339e-23
Identity = 59/131 (45.04%), Postives = 79/131 (60.31%), Query Frame = -1
Query:  387 LHGGLSPSLD--TLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEI-GENMEQNFLQFDPAP 770
            +HGGL  S+D   L +IRA+DR  E P EG MC+LLWSDP  + G G S RG G +FG D+  +F   N L L+ R+H++  EGY    D  ++TVFSAPNYC + GN  A +     +M+ N + F   P
Sbjct:  409 VHGGLF-SVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVP 538          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPP5_RAT (Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = -1
Query:  387 LHGGL-SPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEI-GENMEQNFLQFDPAP 770
            +HGGL S    TLD+IR ++R ++ P  GPMCDLLWSDP  + G  +S RG    FG D+   F   N L  I R+H++  EGY        VTVFSAPNYC + GN A+ + + G ++   F QF   P
Sbjct:  351 MHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENQLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 480          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = -1
Query:  387 LHGGL-SPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEI-GENMEQNFLQFDPAP 770
            +HGGL S    TLD+IR ++R ++ P  GPMCDLLWSDP  + G  +S RG    FG D+   F   N L  I R+H++  EGY        VTVFSAPNYC + GN A+ + + G ++   F QF   P
Sbjct:  351 MHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENQLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 480          
The following BLAST results are available for this feature:
BLAST of CN188639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
PP13_DROME6.422e-2642.31Serine/threonine-protein phosphatase alpha-3 isofo... [more]
PP1B_DROME8.387e-2643.85Serine/threonine-protein phosphatase beta isoform ... [more]
PP1_MEDVA1.095e-2546.72Serine/threonine-protein phosphatase PP1 OS=Medica... [more]
PP12_TRYBB5.436e-2544.53Serine/threonine-protein phosphatase PP1(5.9) OS=T... [more]
PP11_TRYBB2.066e-2443.75Serine/threonine-protein phosphatase PP1(4.8) OS=T... [more]
PP1_DICDI4.602e-2441.98Serine/threonine-protein phosphatase PP1 OS=Dictyo... [more]
PPP5_HUMAN1.025e-2344.62Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]
PPP5_SOLLC1.339e-2345.04Serine/threonine-protein phosphatase 5 OS=Solanum ... [more]
PPP5_RAT2.284e-2343.85Serine/threonine-protein phosphatase 5 OS=Rattus n... [more]
PPP5_MOUSE2.284e-2343.85Serine/threonine-protein phosphatase 5 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188639 ID=CN188639; Name=CN188639; organism=Citrus sinensis; type=EST; length=770bp
TTTTTTTCATCTTGAGCCAGCTCCCATCAGCATGCAACTGAAAGCTGCCC
CTTATCTGCTTTCTACCTCAAAATTCATAAAATTACAGGCCATGATATAA
CATGTTATTGCCGCCCACTTAGACAATATACAAGACAACAGGCCATTGAT
GCCTTCTGTCAGTACTCCTATGGACTCCTTCAGCACATCAACAAAGCAGT
AGTAGGGCAAAACTCGAAACAAAAGAATGATGTTGTAACCTCAACTTAAA
CAACAAAAGCTCCTCCTTTTTAAGGACACATCTACCTGGTAGGTAAACAA
ACATGAATTACAAACAGATGGTGGAAATATTGAAATTACAAAAAATAATC
AGGCGTCTTGCGCGTGGTGTCAGGCTCTATTTGCCGTGGTGCTGGATCAA
ATTGGAGAAAATTCTGCTCCATATTCTCCCCAATCTCTAAAATTGCAGCC
ATATTCCCACATCGGTAACAATAGTTAGGAGCACTAAATACAGTCACCAC
ATTCTTATCCTGACACCAATTGTATCCTTCCATGACAAGCTGGTGGGCTC
TTGAAATAAGACTGAGTCCGTTGGTGTGGTTGAACTGAGATGCTATATCC
TGCCCAAATGTATAGCCCGCACCACGGGGAGATATTCCCCACCCACAGCG
GTCATCTGGATCAGACCACAAGAGATCGCACATGGGTCCTTCATGTGGAA
CCTCCTGTATTCGGTCCAGGGCCCTAATGTTATCTAGTGTATCCAAAGAT
GGTGAAAGTCCTCCATGCAA
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