CN188639

Overview
NameCN188639
Unique NameCN188639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP4CB_DANRE (Serine/threonine-protein phosphatase 4 catalytic subunit B OS=Danio rerio GN=ppp4cb PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.377e-50
Identity = 85/138 (61.59%), Postives = 111/138 (80.43%), Query Frame = -1
Query:  357 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRK 770
            +HGGLSPS+ TLD IR +DR QEVPH+GPMCDLLWSDP+D  GWG+SPRGAGY FG D+ +QFN  N + +I RAHQLVMEGY W  ++ V+TV+SAPNYCYRCGN+AAILE+ E++++ F+ F+ AP++     ++K
Sbjct:  163 VHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTTGWGVSPRGAGYLFGSDVVAQFNAANDIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKEFIIFEAAPQETRGIPSKK 300          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP4C_DROME (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Drosophila melanogaster GN=Pp4-19C PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.421e-49
Identity = 84/130 (64.62%), Postives = 109/130 (83.85%), Query Frame = -1
Query:  381 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 770
            +HGGLSPS+  LD IR++DR QEVPH+GPMCDLLWSDP+D+ GWG+SPRGAGY FG D+ SQFN TN + +I RAHQLVMEG+ W  ++ V+TV+SAPNYCYRCGN+AAILE+ E + ++F+ F+ AP++
Sbjct:  163 VHGGLSPSIQYLDQIRSIDRKQEVPHDGPMCDLLWSDPEDQTGWGVSPRGAGYLFGSDVVSQFNRTNDIDMICRAHQLVMEGFKWHFNETVLTVWSAPNYCYRCGNVAAILELNEYLHRDFVIFEAAPQE 292          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP4C_RAT (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Rattus norvegicus GN=Ppp4c PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.855e-49
Identity = 84/138 (60.87%), Postives = 111/138 (80.43%), Query Frame = -1
Query:  357 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRK 770
            +HGGLSPS+ TLD IR +DR QEVPH+GPMCDLLWSDP+D  GWG+SPRGAGY FG D+ +QFN  N + +  RAHQLVMEGY W  ++ V+TV+SAPNYCYRCGN+AAILE+ E+++++F+ F+ AP++     ++K
Sbjct:  163 VHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTTGWGVSPRGAGYLFGSDVVAQFNAANDIDMTCRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKDFIIFEAAPQETRGIPSKK 300          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP4C_DICDI (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Dictyostelium discoideum GN=ppp4c PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.570e-48
Identity = 83/130 (63.85%), Postives = 108/130 (83.08%), Query Frame = -1
Query:  381 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 770
            +HGGLSPS++TLD IRA+DR QEVPHEGPMCDL+WSDP+D  GW  SPRGAG+ FG+D+  +FNH N L  I RAHQLVMEG+ +  ++ +VTV+SAPNYCYRCGN+AAIL++ EN+++NF  F+ AP++
Sbjct:  161 VHGGLSPSINTLDQIRAIDRKQEVPHEGPMCDLMWSDPEDIPGWNGSPRGAGFLFGEDVVQKFNHDNNLEFICRAHQLVMEGFKYMFNETLVTVWSAPNYCYRCGNVAAILQLDENLKKNFAIFEAAPQE 290          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP2A2_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 2 OS=Paramecium tetraurelia GN=Ppn2 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.018e-47
Identity = 83/141 (58.87%), Postives = 112/141 (79.43%), Query Frame = -1
Query:  348 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDD-RCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRKTPD 767
            HGGLSP+++++D I+ L+R+Q++PHEG MCDLLWSDP++ + GWGISPRGAG+T+G DI  +F H+N L  I+RAHQLVMEG     ++  +T+FSAPNYCYRCGN A I+E+ E ++ N  QF+PAPR+ EP TTR+ PD
Sbjct:  172 HGGLSPAMESVDQIKQLNRVQDIPHEGLMCDLLWSDPEETKNGWGISPRGAGWTWGCDITEKFLHSNKLKQIARAHQLVMEGIQKVHNQKTITIFSAPNYCYRCGNQACIVEVDEQLKMNQTQFEPAPRENEPHTTRRVPD 312          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP2A1_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 1 OS=Paramecium tetraurelia GN=Ppn1 PE=3 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.018e-47
Identity = 83/141 (58.87%), Postives = 112/141 (79.43%), Query Frame = -1
Query:  348 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDD-RCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRKTPD 767
            HGGLSP+++++D I+ L+R+Q++PHEG MCDLLWSDP++ + GWGISPRGAG+T+G DI  +F H+N L  I+RAHQLVMEG     ++  +T+FSAPNYCYRCGN A I+E+ E ++ N  QF+PAPR+ EP TTR+ PD
Sbjct:  172 HGGLSPAMESVDQIKQLNRVQDIPHEGLMCDLLWSDPEETKNGWGISPRGAGWTWGCDITEKFLHSNKLKQIARAHQLVMEGIQKVHNQKTITIFSAPNYCYRCGNQACIVEVDEQLKMNQTQFEPAPRENEPHTTRRVPD 312          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP2A3_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 3 OS=Paramecium tetraurelia GN=Ppn3 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.330e-47
Identity = 83/141 (58.87%), Postives = 111/141 (78.72%), Query Frame = -1
Query:  348 HGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDD-RCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRKTPD 767
            HGGLSP+++++D I+ L+R+Q++PHEG MCDLLWSDP++ + GWGISPRGAG+T+G DI  +F H+N L  I+RAHQLVMEG     ++  +T+FSAPNYCYRCGN A I+E+ E +  N  QF+PAPR+ EP TTR+ PD
Sbjct:  172 HGGLSPAMESVDQIKQLNRVQDIPHEGLMCDLLWSDPEETKNGWGISPRGAGWTWGCDITEKFLHSNKLKQIARAHQLVMEGIQKVHNQKTITIFSAPNYCYRCGNQACIVEVDEQLRMNQTQFEPAPRENEPHTTRRVPD 312          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP4C1_CAEEL (Serine/threonine-protein phosphatase 4 catalytic subunit 1 OS=Caenorhabditis elegans GN=pph-4.1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.869e-47
Identity = 84/131 (64.12%), Postives = 105/131 (80.15%), Query Frame = -1
Query:  381 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDD-RCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 770
            +HGGLSPS+ T+D IR +DR QEVPH+GPMCDLLWSDP++   GWG+SPRGAGY FG D +  F  TNG+ LI RAHQLVMEGY W  ++ V+TV+SAPNYCYRCGN+AAILE+ EN+ + F  F+ AP++
Sbjct:  188 VHGGLSPSISTMDQIRVIDRKQEVPHDGPMCDLLWSDPEEGNVGWGLSPRGAGYLFGADASKTFCETNGVDLICRAHQLVMEGYKWHFNEKVLTVWSAPNYCYRCGNVAAILELDENLNKEFTIFEAAPQE 318          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPX2_ARATH (Serine/threonine-protein phosphatase PP-X isozyme 2 OS=Arabidopsis thaliana GN=PPX2 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.599e-47
Identity = 86/143 (60.14%), Postives = 108/143 (75.52%), Query Frame = -1
Query:  348 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC-GWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRK-TPD 770
            +HGGLSP++ TLD IRA+DR QEVPH+G MCDLLWSDP+D   GWG+SPRGAG+ FG  + + FNH+N +  I RAHQLVMEGY W  +  +VTV+SAPNYCYRCGN+AAILE+ EN+ + F  FD AP++      +K  PD
Sbjct:  160 VHGGLSPAIMTLDQIRAIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHSNNIDYICRAHQLVMEGYKWMFNSQIVTVWSAPNYCYRCGNVAAILELDENLNKEFRVFDAAPQESRGALAKKPAPD 302          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPX1_ARATH (Serine/threonine-protein phosphatase PP-X isozyme 1 OS=Arabidopsis thaliana GN=PPX1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.275e-46
Identity = 84/143 (58.74%), Postives = 106/143 (74.13%), Query Frame = -1
Query:  348 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC-GWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIE-PDTTRKTPD 770
            +HGGLSP++ TLD IR +DR QEVPH+G MCDLLWSDP+D   GWG+SPRGAG+ FG  + + FNH+N +  I+RAHQLVMEGY W  D  +VTV+SAPNYCYRCGN+A+ILE+ EN+ + F  FD A +    P   +  PD
Sbjct:  160 VHGGLSPAIMTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHSNNIDYIARAHQLVMEGYKWMFDSQIVTVWSAPNYCYRCGNVASILELDENLNKEFRVFDAAQQDSRGPPAKKPAPD 302          
The following BLAST results are available for this feature:
BLAST of CN188639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
PP4CB_DANRE6.377e-5061.59Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_DROME1.421e-4964.62Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_RAT1.855e-4960.87Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_DICDI4.570e-4863.85Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2A2_PARTE1.018e-4758.87Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A1_PARTE1.018e-4758.87Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A3_PARTE1.330e-4758.87Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP4C1_CAEEL3.869e-4764.12Serine/threonine-protein phosphatase 4 catalytic s... [more]
PPX2_ARATH6.599e-4760.14Serine/threonine-protein phosphatase PP-X isozyme ... [more]
PPX1_ARATH3.275e-4658.74Serine/threonine-protein phosphatase PP-X isozyme ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188639 ID=CN188639; Name=CN188639; organism=Citrus sinensis; type=EST; length=770bp
TTTTTTTCATCTTGAGCCAGCTCCCATCAGCATGCAACTGAAAGCTGCCC
CTTATCTGCTTTCTACCTCAAAATTCATAAAATTACAGGCCATGATATAA
CATGTTATTGCCGCCCACTTAGACAATATACAAGACAACAGGCCATTGAT
GCCTTCTGTCAGTACTCCTATGGACTCCTTCAGCACATCAACAAAGCAGT
AGTAGGGCAAAACTCGAAACAAAAGAATGATGTTGTAACCTCAACTTAAA
CAACAAAAGCTCCTCCTTTTTAAGGACACATCTACCTGGTAGGTAAACAA
ACATGAATTACAAACAGATGGTGGAAATATTGAAATTACAAAAAATAATC
AGGCGTCTTGCGCGTGGTGTCAGGCTCTATTTGCCGTGGTGCTGGATCAA
ATTGGAGAAAATTCTGCTCCATATTCTCCCCAATCTCTAAAATTGCAGCC
ATATTCCCACATCGGTAACAATAGTTAGGAGCACTAAATACAGTCACCAC
ATTCTTATCCTGACACCAATTGTATCCTTCCATGACAAGCTGGTGGGCTC
TTGAAATAAGACTGAGTCCGTTGGTGTGGTTGAACTGAGATGCTATATCC
TGCCCAAATGTATAGCCCGCACCACGGGGAGATATTCCCCACCCACAGCG
GTCATCTGGATCAGACCACAAGAGATCGCACATGGGTCCTTCATGTGGAA
CCTCCTGTATTCGGTCCAGGGCCCTAATGTTATCTAGTGTATCCAAAGAT
GGTGAAAGTCCTCCATGCAA
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