CN188639

Overview
NameCN188639
Unique NameCN188639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP4C1_CAEBR (Serine/threonine-protein phosphatase 4 catalytic subunit 1 OS=Caenorhabditis briggsae GN=pph-4.1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.296e-46
Identity = 82/131 (62.60%), Postives = 103/131 (78.63%), Query Frame = -1
Query:  381 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDD-RCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 770
            +HGGLSPS+ T+D IR +DR QEVPH+GPMCDLLWSDP++   GWG+SPRGAGY FG D +  F   N + LI RAHQLVMEGY W  ++ V+TV+SAPNYCYRCGN+AAILE+ EN+ + F  F+ AP++
Sbjct:  188 VHGGLSPSISTMDQIRVIDRKQEVPHDGPMCDLLWSDPEEGNVGWGLSPRGAGYLFGADASKTFCEANSVDLICRAHQLVMEGYKWHFNEKVLTVWSAPNYCYRCGNVAAILELDENLNREFTIFEAAPQE 318          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPX4_PARTE (Serine/threonine-protein phosphatase PP-X homolog 4 OS=Paramecium tetraurelia GN=Ppx4 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 79/130 (60.77%), Postives = 104/130 (80.00%), Query Frame = -1
Query:  381 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 770
            +HGGLSPS+ T+D+IRA+DR QEVPH+G MCDL+WSDPD+  GW +SPRGAGY FG D+   FN  N + LI RAHQLVMEGY    ++ +VTV+SAPNYCYRCGN+A+ILE+ EN+ +++  F+ AP++
Sbjct:  162 VHGGLSPSIKTMDDIRAIDRKQEVPHDGAMCDLMWSDPDEIEGWNLSPRGAGYLFGGDVVDDFNRKNNIELICRAHQLVMEGYRVMFNEQLVTVWSAPNYCYRCGNVASILELDENLAKSYKIFEAAPQE 291          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPX3_PARTE (Serine/threonine-protein phosphatase PP-X homolog 3 OS=Paramecium tetraurelia GN=Ppx3 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.919e-44
Identity = 80/141 (56.74%), Postives = 103/141 (73.05%), Query Frame = -1
Query:  348 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRKTPD 770
            +HGGLSPS+ T+D+IRA+DR QEVPH+G MCDL+WSDPD+  GW +SPRGAGY FG D+   FN  N + LI RAHQLVMEGY    ++ +VTV+SAPNYCYRCGN+A+ILE+ EN+ + +  F+ A         +  PD
Sbjct:  162 VHGGLSPSIKTMDDIRAIDRKQEVPHDGAMCDLMWSDPDEIEGWNLSPRGAGYLFGGDVVDDFNRKNNIELICRAHQLVMEGYRVMFNEQLVTVWSAPNYCYRCGNVASILELDENLTKQYKIFEAAQENKGLPAKKPIPD 302          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP4C_ASHGO (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Ashbya gossypii GN=PPH3 PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.682e-42
Identity = 78/130 (60.00%), Postives = 100/130 (76.92%), Query Frame = -1
Query:  381 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 770
            +HGGLSP + T+D IR++DR QEVPHEG MCDLLWSDPD+   W +SPRGAG+ FG++   QF H N +SLI+RAHQLVMEGY    D  +VTV+SAPNYCYRCGN+AA+L I +++ +N+  F+  P Q
Sbjct:  162 VHGGLSPDVMTVDEIRSIDRKQEVPHEGAMCDLLWSDPDEVDTWSLSPRGAGFLFGKNEVDQFLHRNDISLIARAHQLVMEGYKEMFDGGLVTVWSAPNYCYRCGNVAAVLRIDDDLSRNYTIFEAVPAQ 291          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPX2_PARTE (Serine/threonine-protein phosphatase PP-X homolog 2 OS=Paramecium tetraurelia GN=Ppx2 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.747e-42
Identity = 76/128 (59.38%), Postives = 99/128 (77.34%), Query Frame = -1
Query:  387 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAP 770
            +HGGLSP + T+D IR ++R QEVPHEG MCDL+WSDPD+  GW  S RGAG+ FG D+  +FN  NG+SLI RAHQL MEG+    D ++VTV+SAPNYCYRCGN+A+ILE+ EN+++ +  F+ AP
Sbjct:  160 VHGGLSPYIKTIDEIRIINRKQEVPHEGVMCDLMWSDPDEIEGWSQSARGAGFVFGADVVKEFNRRNGISLICRAHQLAMEGFKLMFDNSLVTVWSAPNYCYRCGNVASILELDENLKKYYKLFEAAP 287          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPX1_PARTE (Serine/threonine-protein phosphatase PP-X homolog 1 OS=Paramecium tetraurelia GN=Ppx1 PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.747e-42
Identity = 76/128 (59.38%), Postives = 99/128 (77.34%), Query Frame = -1
Query:  387 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAP 770
            +HGGLSP + T+D IR ++R QEVPHEG MCDL+WSDPD+  GW  S RGAG+ FG D+  +FN  NG+SLI RAHQL MEG+    D ++VTV+SAPNYCYRCGN+A+ILE+ EN+++ +  F+ AP
Sbjct:  160 VHGGLSPYIKTIDEIRIINRKQEVPHEGVMCDLMWSDPDEIEGWSQSARGAGFVFGADVVKEFNRRNGISLICRAHQLAMEGFKLMFDNSLVTVWSAPNYCYRCGNVASILELDENLKKYYKLFEAAP 287          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP4C_CANGA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Candida glabrata GN=PPH3 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.429e-41
Identity = 77/130 (59.23%), Postives = 98/130 (75.38%), Query Frame = -1
Query:  381 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 770
            +HGGLSP + TL+ IRA+DR QEVPHEG MCDLLWSDPD+   W +SPRGAG+ FG+    +F H N + LI+RAHQLVMEGY    D  +VTV+SAPNYCYRCGN+AA+L+I +N+E+ +  F+    Q
Sbjct:  161 VHGGLSPDITTLNEIRAIDRKQEVPHEGGMCDLLWSDPDEVDTWSMSPRGAGFLFGKGEVDEFLHVNNVDLIARAHQLVMEGYKEMFDGGLVTVWSAPNYCYRCGNVAAVLKIEDNLERKYTIFEAVQAQ 290          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP11_YEAST (Serine/threonine-protein phosphatase PP1-1 OS=Saccharomyces cerevisiae GN=SIT4 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.230e-41
Identity = 76/129 (58.91%), Postives = 98/129 (75.97%), Query Frame = -1
Query:  387 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNW-CQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAP 770
            +HGGLSP +  LD IR L R QEVPHEG   DLLWSDPD+   W +SPRGAG+ FG  +A +FNH NGL+LI+RAHQLVMEG+ +   +K+VVTV+SAPNYCYRCGN+A+++++ E++E  F  F   P
Sbjct:  163 VHGGLSPEIRMLDQIRVLSRAQEVPHEGGFSDLLWSDPDNVEAWQVSPRGAGWLFGSKVAREFNHVNGLNLIARAHQLVMEGFKYHFPEKDVVTVWSAPNYCYRCGNVASVMKVDEDLEPTFKIFSAVP 291          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PP4C2_CAEEL (Serine/threonine-protein phosphatase 4 catalytic subunit 2 OS=Caenorhabditis elegans GN=pph-4.2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.205e-40
Identity = 81/116 (69.83%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  426 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC-GWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGE 770
            +HGGLSPS+ TLD IR LDR  EVPHEGPMCDLLWSDP++ C GWGISPRGAGY FG D A  F   N    I RAHQLVMEGY     K VVTV+SAPNYCYRCGN+AAI+E+ E
Sbjct:  173 VHGGLSPSIATLDQIRVLDRKIEVPHEGPMCDLLWSDPEEGCSGWGISPRGAGYLFGGDAAELFCENNDFLRICRAHQLVMEGYKLHFRKRVVTVWSAPNYCYRCGNVAAIMEVTE 288          
BLAST of CN188639 vs. ExPASy Swiss-Prot
Match: PPP6_DICDI (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Dictyostelium discoideum GN=ppp6c PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.574e-40
Identity = 73/124 (58.87%), Postives = 95/124 (76.61%), Query Frame = -1
Query:  399 LHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQF 770
            +HGGLSP + TLD IR + R  E+PHEGP CDL+WSDP+D   W  SPRGAG+ FG  + ++F H NGL+LI RAHQLV EGY +  D ++VTV+SAPNYCYRCGN+A+IL + EN++++F  F
Sbjct:  163 VHGGLSPKVRTLDQIRIISRNLEIPHEGPFCDLMWSDPEDIEQWQPSPRGAGWLFGSKVTAEFEHINGLNLICRAHQLVQEGYRYMFDNSLVTVWSAPNYCYRCGNVASILSLNENLDRDFKIF 286          
The following BLAST results are available for this feature:
BLAST of CN188639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
PP4C1_CAEBR7.296e-4662.60Serine/threonine-protein phosphatase 4 catalytic s... [more]
PPX4_PARTE8.067e-4560.77Serine/threonine-protein phosphatase PP-X homolog ... [more]
PPX3_PARTE8.919e-4456.74Serine/threonine-protein phosphatase PP-X homolog ... [more]
PP4C_ASHGO1.682e-4260.00Serine/threonine-protein phosphatase 4 catalytic s... [more]
PPX2_PARTE3.747e-4259.38Serine/threonine-protein phosphatase PP-X homolog ... [more]
PPX1_PARTE3.747e-4259.38Serine/threonine-protein phosphatase PP-X homolog ... [more]
PP4C_CANGA2.429e-4159.23Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP11_YEAST9.230e-4158.91Serine/threonine-protein phosphatase PP1-1 OS=Sacc... [more]
PP4C2_CAEEL1.205e-4069.83Serine/threonine-protein phosphatase 4 catalytic s... [more]
PPP6_DICDI1.574e-4058.87Serine/threonine-protein phosphatase 6 catalytic s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006H18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188639 ID=CN188639; Name=CN188639; organism=Citrus sinensis; type=EST; length=770bp
TTTTTTTCATCTTGAGCCAGCTCCCATCAGCATGCAACTGAAAGCTGCCC
CTTATCTGCTTTCTACCTCAAAATTCATAAAATTACAGGCCATGATATAA
CATGTTATTGCCGCCCACTTAGACAATATACAAGACAACAGGCCATTGAT
GCCTTCTGTCAGTACTCCTATGGACTCCTTCAGCACATCAACAAAGCAGT
AGTAGGGCAAAACTCGAAACAAAAGAATGATGTTGTAACCTCAACTTAAA
CAACAAAAGCTCCTCCTTTTTAAGGACACATCTACCTGGTAGGTAAACAA
ACATGAATTACAAACAGATGGTGGAAATATTGAAATTACAAAAAATAATC
AGGCGTCTTGCGCGTGGTGTCAGGCTCTATTTGCCGTGGTGCTGGATCAA
ATTGGAGAAAATTCTGCTCCATATTCTCCCCAATCTCTAAAATTGCAGCC
ATATTCCCACATCGGTAACAATAGTTAGGAGCACTAAATACAGTCACCAC
ATTCTTATCCTGACACCAATTGTATCCTTCCATGACAAGCTGGTGGGCTC
TTGAAATAAGACTGAGTCCGTTGGTGTGGTTGAACTGAGATGCTATATCC
TGCCCAAATGTATAGCCCGCACCACGGGGAGATATTCCCCACCCACAGCG
GTCATCTGGATCAGACCACAAGAGATCGCACATGGGTCCTTCATGTGGAA
CCTCCTGTATTCGGTCCAGGGCCCTAATGTTATCTAGTGTATCCAAAGAT
GGTGAAAGTCCTCCATGCAA
back to top